zol

• Update processing of miniprot mapping results done in prepTG, including: switching to the most updated miniprot version (v0.13), using PAF cigar string alone to redetermine CDS coordinates, changing the field qualifiers for CDS features in created GenBank files, and adding the -I argument when running miniprot to have it auto set the max allowed intron size.
• Update fai's GenBank creation for extracted gene clusters to avoid including partial CDS features when multiple-exons are present and the boundary for the gene cluster falls in an intronic region.

What's Changed

• Update util.py by @raufs in https://github.com/Kalan-Lab/zol/pull/84

Full Changelog: https://github.com/Kalan-Lab/zol/compare/v1.5.2...v1.5.3