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Published September 10, 2018 | Version 0.2.0
Software Open

ms609/TreeSearch: 0.2.0

Authors/Creators

  • 1. Department of Earth Sciences, Durham University

Description

New features
  • RootTree function allows rooting of tree on incompletely specified or single-taxon outgroup
  • AllTBR returns all trees one TBR rearrangement away
  • TBRMoves reports all possible TBR rearrangements
  • Jackknife conducts Jackknife resampling
  • SplitFrequency reports frequency of clades in a forest
  • SupportColour allows visual marking of support values
  • ApeTime reports the creation date of an ape-exported tree
  • SortTree flips nodes into a consistent left-right order
  • AsBinary supports 0
Enhancements
  • [IW]RatchetConsensus renamed to [IW]MultiRatchet, giving a better description of the function's purpose
  • Don't warn about missing EOL when reading Nexus or TNT files
  • Add new 12-colour colourblind-friendly palette
  • FitchSteps now supports datasets with tips not found in tree
  • Improve portability of function ReadTntTree
Bug fixes
  • [IW]MultiRatchet now considers trees identical even if they've been hit a different number of times

Files

ms609/TreeSearch-0.2.0.zip

Files (528.4 kB)

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md5:0312f2e8388750bfe3792aef2e9c452e
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Additional details

Related works

Is supplement to
https://github.com/ms609/TreeSearch/tree/0.2.0 (URL)