Published September 10, 2018
| Version 0.2.0
Software
Open
ms609/TreeSearch: 0.2.0
Description
New features
RootTree
function allows rooting of tree on incompletely specified or single-taxon outgroupAllTBR
returns all trees one TBR rearrangement awayTBRMoves
reports all possible TBR rearrangementsJackknife
conducts Jackknife resamplingSplitFrequency
reports frequency of clades in a forestSupportColour
allows visual marking of support valuesApeTime
reports the creation date of an ape-exported treeSortTree
flips nodes into a consistent left-right orderAsBinary
supports 0
- [IW]RatchetConsensus renamed to [IW]MultiRatchet, giving a better description of the function's purpose
- Don't warn about missing EOL when reading Nexus or TNT files
- Add new 12-colour colourblind-friendly palette
- FitchSteps now supports datasets with tips not found in tree
- Improve portability of function
ReadTntTree
- [IW]MultiRatchet now considers trees identical even if they've been hit a different number of times
Files
ms609/TreeSearch-0.2.0.zip
Files
(528.4 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/ms609/TreeSearch/tree/0.2.0 (URL)