PyBIDS: Python tools for BIDS datasets

Yarkoni, Tal; Markiewicz, Christopher J.; de la Vega, Alejandro; Gorgolewski, Krzysztof J.; Salo, Taylor; Gau, Remi; Halchenko, Yaroslav O.; Papadopoulos Orfanos, Dimitri; Esteban, Oscar; McNamara, Quinten; DeStasio, Krista; Poline, Jean-Baptiste; Johnson, Hans; Kalenkovich, Evgenii; Petrov, Dmitry; Nielson, Dylan M.; James Kent; Kent, James D.; Appelhoff, Stefan; Van Dyken, Peter; Goncalves, Mathias; Bansal, Shashank; Hayot-Sasson, Valérie; Carlin, Johan; Kiar, Gregory; Whitaker, Kirstie; Ghosh, Satrajit; Wagner, Adina; DuPre, Elizabeth; Khan, Ali; Janke, Andrew; Ivanov, Alexander; Gillman, Ashley; Wennberg, Johannes; Tirrell, Lee S.; Tilley II, Steven; Li, Adam; Erkent, Alp; Legarreta, Jon Haitz; Waller, Lea; Jas, Mainak; Hanke, Michael; Guenther, Nick; Poldrack, Russell; Rokem, Ariel; Boulay, Chadwick; Mumford, Jeanette; Cook, Philip A; Thual, Alexis; Pinsard, Basile; Holdgraf, Chris; Staden, Isla; Staph, Jason A.; Drew, William; Sinha, Ankur; Rovai, Antonin; Adebimpe, Azeez; Thirion, Bertrand; Kleinschmidt, Dave F.; Dickie, Erin W; Ben-Zvi, Gal; Lee, John A.; Kruper, John; Visconti di Oleggio Castello, Matteo; Notter, Michael Philipp; Roca, Pauline; Blair, Ross; Pati, Sarthak; Sundaravadivelu, Suganya; Asciutto, Will; pierre-nedelec

doi:10.5281/zenodo.14100815

Published November 12, 2024 | Version 0.18.0

Software Open

PyBIDS: Python tools for BIDS datasets

1. University of Texas at Austin
2. Stanford University
3. Department of Psychology, Stanford University
4. University of Pennsylvania
5. Université catholique de Louvain
6. Dartmouth College
7. CEA
8. University of Oregon
9. McGill University
10. University of Iowa
11. Institute for Problems of Information Transmission
12. National Institute of Mental Health
13. Neuroscience Program, University of Iowa
14. Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany
15. Western University, London, ON, CA
16. Concordia University
17. MRC Cognition and Brain Sciences Unit
18. Montreal Neurological Institute and Hospital
19. Alan Turing Institute; Department of Psychiatry, University of Cambridge
20. MIT, HMS
21. Psychoinformatics Lab, Institute of Psychology, Otto-von-Guericke University Magdeburg
22. Australian eHealth Research Centre, Commonwealth Scientific and Industrial Research Organisation; University of Queensland
23. KTH Royal Institute of Technology
24. CorticoMetrics LLC
25. Holland Bloorview Kids Rehabilitation Hospital
26. Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA
27. Child Mind Institute
28. Université de Sherbrooke
29. Charite Universitatsmedizin Berlin, Germany
30. Télécom ParisTech, France
31. Otto-von-Guericke-University Magdeburg, Germany
32. Polytechnique Montréal
33. The University of Washington eScience Institute
34. Ottawa Hospital Research Institute
35. CEA, Inria
36. University of Montréal, Montréal, Canada
37. Berkeley Institute for Data Science; University of California at Berkeley
38. Queen Mary University London
39. Brigham and Women's Hospital
40. University College London
41. Université Libre de Bruxelles - Hôpital Erasme
42. INRIA
43. Rutgers University
44. Centre for Addiction and Mental Health, University of Toronto, Canada
45. Sagol School of Neuroscience, Tel Aviv University
46. NIMH IRP
47. UC Berkeley
48. The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland
49. Sainte-Anne Hospital Center, Université Paris Descartes

PyBIDS is a Python library to centralize interactions with datasets conforming BIDS (Brain Imaging Data Structure) format. For more information about BIDS visit bids.neuroimaging.io.

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Is supplement to: Software: https://github.com/bids-standard/pybids/tree/0.18.0 (URL)

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PyBIDS: Python tools for BIDS datasets

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