Published January 22, 2019 | Version v0.4.0
Software Open

Oshlack/STRetch: STRetch v0.4.0

Authors/Creators

Description

Major changes:

  • Introduces an exome bam pipeline: allows running STRetch directly from exomes in bam format Minor changes/bugfixes
  • Add unit tests and coverage reports
  • Add tests for identify_locus.py and its dependencies, and refactor these to aid testing
  • Round off floating point numbers in result STR.tsv files
  • identify_locus.py sorts bed inputs by default
  • Fix some paths pipeline_config_template.groovy

Files

Oshlack/STRetch-v0.4.0.zip

Files (1.9 MB)

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Additional details

Related works

Is supplement to
https://github.com/Oshlack/STRetch/tree/v0.4.0 (URL)