Metagenome-Assembled Genomes Abundance & Activity Tables. Environmental Parameters Associated with the dataset.
Description
Lake Mendota, WI, USA, is a temperate lake subject to annual temperature and oxygen fluctuations. Each summer, the water column becomes anoxic (no-oxygen). In 2020, we sampled the lake at weekly intervals, at different depths (5, 10, 15, 20 and 23.5m). For each time+depth sample, we collected metagenomes, viromes and metatranscriptomes. Environmental data profiles were collected on-site for each sampling day.
Following standard metagenomic binning best practices, we obtained 431 metagenomes-assembled-genomes (MAGs).
This record comprises the microbial abundance and expression table for these MAGs, and the environmental profiles collected each day.
Files
coverm_431_MAGS_metagenomes_reads_count.csv
Files
(283.0 kB)
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Additional details
Related works
- Is part of
- Preprint: 10.1101/2023.04.19.537559 (DOI)
Dates
- Available
-
2024-11-07