Published November 7, 2024 | Version 1.0
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Metagenome-Assembled Genomes Abundance & Activity Tables. Environmental Parameters Associated with the dataset.

  • 1. University of Wisconsin-Madison

Description

Lake Mendota, WI, USA, is a temperate lake subject to annual temperature and oxygen fluctuations. Each summer, the water column becomes anoxic (no-oxygen). In 2020, we sampled the lake at weekly intervals, at different depths (5, 10, 15, 20 and 23.5m). For each time+depth sample, we collected metagenomes, viromes and metatranscriptomes. Environmental data profiles were collected on-site for each sampling day. 

Following standard metagenomic binning best practices, we obtained 431 metagenomes-assembled-genomes (MAGs).

This record comprises the microbial abundance and expression table for these MAGs, and the environmental profiles collected each day.

Files

coverm_431_MAGS_metagenomes_reads_count.csv

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Additional details

Related works

Is part of
Preprint: 10.1101/2023.04.19.537559 (DOI)

Dates

Available
2024-11-07