Published November 6, 2024 | Version v1
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Supplemental_Data_S1 for "Kmer Manifold Approximation and Projection for visualizing DNA sequences"

  • 1. ROR icon Aalto University

Description

This dataset includes the results generated by KMAP software applied to the htselexdata dataset. Each folder within the dataset contains outputs from multiple dimensionality reduction techniques, including KMAP, UMAP, t-SNE, and MDS. Additionally, motifs and logos have been derived using both KMAP and MEME methods. This data provides insights into motif patterns and structures, which can be beneficial for further bioinformatics and computational biology analyses.

Files

Supplemental_Data_S1.zip

Files (434.9 MB)

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Additional details

Additional titles

Alternative title
KMAP visualization for HT-SELEX dataset compared with MEME, UMAP,tSNE,MDS,PCA

Related works

Is supplement to
Figure: 10.1101/2024.04.12.589197 (DOI)

Dates

Available
2024-11-06

Software

Repository URL
https://github.com/chengl7-lab/kmap.git
Development Status
Active