Published November 6, 2024
| Version v1
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Supplemental_Data_S1 for "Kmer Manifold Approximation and Projection for visualizing DNA sequences"
Description
This dataset includes the results generated by KMAP software applied to the htselexdata dataset. Each folder within the dataset contains outputs from multiple dimensionality reduction techniques, including KMAP, UMAP, t-SNE, and MDS. Additionally, motifs and logos have been derived using both KMAP and MEME methods. This data provides insights into motif patterns and structures, which can be beneficial for further bioinformatics and computational biology analyses.
Files
Supplemental_Data_S1.zip
Files
(434.9 MB)
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|---|---|---|
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md5:16a9ad63decc5f3cd13642b82d860191
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Additional details
Additional titles
- Alternative title
- KMAP visualization for HT-SELEX dataset compared with MEME, UMAP,tSNE,MDS,PCA
Related works
- Is supplement to
- Figure: 10.1101/2024.04.12.589197 (DOI)
Dates
- Available
-
2024-11-06
Software
- Repository URL
- https://github.com/chengl7-lab/kmap.git
- Development Status
- Active