Published November 5, 2024
| Version v4
Dataset
Open
miRBench datasets
Authors/Creators
- 1. Centre for Molecular Medicine and Biobanking, University of Malta, Msida, Malta
- 2. Department of Applied BIomedical Science, Faculty of Health Sciences, University of Malta, Msida, Malta
- 3. National Centre for Biomolecular Research, Faculty of Science, Masaryk University, 61137 Brno, Czech Republic
-
4.
Central European Institute of Technology – Masaryk University
Description
## Changelog
PhyloP and PhastCons conservation scores for the target gene sequence have been added to the AGO_eCLIP_Manakov2022 datasets as two additional columns - 'gene_phyloP' and' gene_phastCons'.
Both of new columns contain list of conservation scores rounded to 3 decimal places, one score for each nucelotide in the gene sequence.
PhyloP and PhastCons scores were obtained from:
- https://hgdownload.cse.ucsc.edu/goldenPath/hg38/phyloP100way/hg38.phyloP100way.bw
- https://hgdownload.cse.ucsc.edu/goldenpath/hg38/phastCons100way/hg38.phastCons100way.bw
Downloaded on 15 September 2024.
Files
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Additional details
Related works
- Is derived from
- Preprint: 10.1101/2022.02.13.480296 (DOI)
- Is published in
- Publication: 10.3390/genes13122323 (DOI)
- Publication: 10.1038/s41598-023-49757-z (DOI)