Published August 23, 2018 | Version v1
Dataset Open

Berger POPC/POPE (50:50 ratio) MD simulation (300 K - 400ns - 1 bar)

  • 1. Laboratoire LitCh, Université de Poitiers (France)
  • 2. Laboratoire des Biomolécules, CNRS, Sorbonne Université, ENS

Description

Berger POPC/POPE (50:50 ratio) bilayer simulation (300 K, with 128 POPC and 128 POPE lipids fully hydrated with 43 water molecules per lipid). The trajectory contains the whole simulation from 0 to 400 ns skipped every 100 ps and centered on the P atoms. No ions were added as there is no global net charge in the system. This bilayer was used to calculate the order parameter and the area per lipid for the NMRlipids IV project (on the time window 100-300 ns).
It should be noted that for this specific simulation, using PE lipids, the Berger forcefield was modified to add a repulsive potential onto the ethanolamine hydrogens.

 

Files

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