pyPESTO - Parameter EStimation TOolbox for python

Published October 31, 2024 | Version v0.5.4

Software Open

Breaking Changes
- Remove Aesara support (#1453, #1455)
General
- CI improvements (#1436, #1437, #1438, #1439, #1440, #1443, #1473, #1484, #1486, #1490, #1485)
- Update references/documentation (#1404, #1456, #1474, #1479, #1483, #1470, #1498)
Profile
- Improve Profiling Code (#1447)
Visualize
- allow log and/or linear scale for visualization (#1435)
- More informative error message for start indices. (#1472)
Optimization
- SacessOptimizer: Fix acceptance threshold for objective improvement (#1457)
- SacessOptimizer: expose more hyperparameters + minor fixes (#1459, #1476)
- SacessOptimizer, ESSOptimizer: Bound-normalize parameters for proximity check (#1462)
- ESSOptimizer: Fix bug in recombination and go-beyond (#1477, #1480)
Objective
- FD-objective correctly working with fixed parameters (#1446)
- Petab Importer reforge (#1442, #1502)
- Use cloudpickle for serializing NegLogParameterPriors (#1467)
- Update PEtab.jl integration to match version 3.X (#1489)
Sampling
- Bayes Factor Tutorial (#1444)
Ensemble
- Added HPD calculation to ensemble (#1431)

Notes

If you use this software, please cite it using these metadata.

Name	Size	Download all
ICB-DCM/pyPESTO-v0.5.4.zip md5:de511f0359fa957b7bc5c6a051bc22be	1.8 MB	Preview Download

Is supplement to: Software: https://github.com/ICB-DCM/pyPESTO/tree/v0.5.4 (URL)