Published October 3, 2023
| Version v2
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Escherichia and Shigella GTDB species identification MASH sketch for ECTYPER
- 1. Public Health Agency of Canada Laboratory for Foodborne Zoonoses
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2.
Public Health Agency of Canada
Description
This is a MASH sketch made from public Escherichia and Shigella genomes collected from EnteroBase and NCBI RefSeq sources. It complements the existing GTDB comprehensive microbial taxonomy database sketch generated from 2023-10-03. This sketch is used by ECTYPER v2.0.0 Species ID module to perform species identification of the inputs as part of quality control and submission information verification.
Files
Files
(988.9 MB)
| Name | Size | Download all |
|---|---|---|
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md5:48a35a96423e47524f8d7b655ac47184
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988.9 MB | Download |
Additional details
Dates
- Created
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2023-10-03Database generated