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Published October 21, 2024 | Version v0.27.0
Software Open

AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

Authors/Creators

Description

This release comes with an updated version of the SUNDIALS package (7.1.1) (https://github.com/AMICI-dev/AMICI/pull/2513). For C++ users of some of AMICI's internal RAII classes, this may include some breaking changes. The Python API is not affected.

Note regarding editable installations (pip install -e ...): Due to the SUNDIALS update, it will be necessary to clean out some temporary build directories (at least ThirdParty/sundials/build/, python/sdist/build/) before rebuilding the package.

Fixes

  • Fixed a bug that led to program termination if a root-after-reinitialization error (potentially also others) occurred at an output timepoint

    by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2555

  • CMake: Fixes compilation errors for models named model

    by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2547

  • Updated CMake export config, making it easier to use AMICI in CMake projects and fixing some potential issues with interferring packages

    by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2540

  • CMake: Set policies for CMake 3.31

    by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2539

  • Documentation fixes by @FFroehlich, @ChocolateCharlie, @dweindl

Full Changelog: https://github.com/AMICI-dev/AMICI/compare/v0.26.3...v0.27.0

Notes

If you use this software, please cite both the article from preferred-citation and the software itself.

Files

AMICI-dev/AMICI-v0.27.0.zip

Files (7.2 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/AMICI-dev/AMICI/tree/v0.27.0 (URL)