Single-cell and TCR sequencing analysis of peripheral blood mononuclear cells from Duchenne muscular dystrophy patients before and after dosing with AAV9 mini-dystrophin
Creators
- Emami, Michael (Researcher)1, 2
-
Brimble, Mark
(Researcher)3
- Espinoza, Alejandro (Researcher)1
- Owens, Jane (Researcher)4
- Whiteley, Laurence (Researcher)4
- Casinghino, Sandra (Researcher)4
- Lanz, Thomas (Researcher)4
- Farahat, Philip (Researcher)5
- Pellegrini, Matteo (Researcher)1
- Young, Courtney (Researcher)6
- Thomas, Paul (Researcher)3
- McNally, Elizabeth (Researcher)7
-
Villalta, S Armando
(Researcher)5
-
Schattgen, Stefan
(Researcher)3
- Spencer, Melissa (Researcher)1, 2
Description
We used single-cell RNA sequencing and T cell receptor (TCR) sequencing on peripheral blood mononuclear cells from five patients with Duchenne muscular dystrophy before and after dosing with PF-06939926 fordadistrogene movaparvovec. Included in this repository are the following:
SS_MS_DMD_AAV_integrated.rds is a Seurat object containing single-cell gene expression for pre and post time points from all subjects. TCR information is included in the metadata slot.
Supplemental Data File 1 PostvsPre_DEG_tables_ANNOTATED by_cell_type.xlsx contains the differentially expressed genes between the pre and post time points by immune cell population.
MS_DMD_all_conga_final.h5ad is an AnnData object containing the final output of the CoNGA analysis. Results of the analysis are stored in adata.uns['conga_results']. See the github page for more information on the data structure: CoNGA github
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