Vizitig: A visual tool for colored de Bruijn graphs exploration
Authors/Creators
- 1. CRIStAL - Université de Lille, CNRS, Centrale
- 2. CRIStAL - Université de Lille, Inria, CNRS, Centrale
- 3. LIMOS
Description
Vizitig is a novel visualization tool designed for the exploration of colored de Bruijn graphs, a structure increasingly used for comparative genomics, pangenomics, and metagenomics. Unlike existing tools such as Bandage, Vizitig supports the simultaneous visualization of multiple genomes or samples by leveraging color-coding schemes to highlight shared and unique sequences or meta-data. Vizitig allows users to efficiently manage, navigate, and render graphs annotated with various metadata, such as genomic features or sample-specific information. Developed as a cross-platform Python application, Vizitig integrates a user-friendly web interface and a command-line-free environment, making it accessible to a broader audience of genomic researchers.
Files
vizitig_manuscript-2.pdf
Files
(7.9 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:434908b1d8da193902b918e5aa57c148
|
7.9 MB | Preview Download |
Additional details
Funding
- Agence Nationale de la Recherche
- Find-RNA ANR-23-CE45-0003-0
Dates
- Submitted
-
2024-10-14
Software
- Repository URL
- https://gitlab.inria.fr/pydisk/examples/vizitig