Published June 9, 2024 | Version v1
Event Open

Digital Collections Data and Tracking Disease Workshop 2

  • 1. ROR icon University of Michigan–Ann Arbor
  • 2. ROR icon University of Illinois Urbana-Champaign
  • 3. Prairie Research Institute
  • 4. Illinois Natural History Survey
  • 5. Species File Group
  • 6. University of Florida Biodiversity Institute
  • 7. ConverSketch
  • 1. ROR icon University of New Mexico
  • 2. ROR icon Field Museum of Natural History
  • 3. National Zoological Park
  • 4. National Museum of Natural History
  • 5. ROR icon University of North Carolina at Charlotte
  • 6. Universidad de la República
  • 7. ROR icon Northern Michigan University
  • 8. ROR icon University of Michigan–Ann Arbor
  • 9. ROR icon University of Minnesota
  • 10. ROR icon University of Florida
  • 11. ROR icon DePaul University
  • 12. ROR icon University of California, Berkeley
  • 13. ROR icon University of Utah
  • 14. ROR icon Texas A&M University
  • 15. ROR icon Auburn University

Description

Grant Abstract

This award to the University of Florida supports a series of workshops that will catalyze collaborations around suites of data housed in natural history collections. The workshops will identify gaps in biodiversity and infectious disease data to address basic research and broader social issues pertinent to diseases that originate from other animals. An outcome of the workshops will be a strategy for framing an integrated agenda for transdisciplinary training and research. Products of the workshops will be broadly applicable for improving the community's understanding of infectious diseases in general, achieved through the strengthening the cyberinfrastructure supporting and connecting the important data stored in natural history collections. The plan is to assemble a diverse group of participants that includes students and contributes to the preparation of the next generation of STEM researchers to sustain these conversations.

The funded series of workshops will bring together representatives from natural history collections, biodiversity informatics, taxonomy, systematics, ecology, genetics, virology, pathobiology, infectious disease, epidemiology, social science, and communications. This transdisciplinary effort will establish a dialogue and frame an integrated research agenda for understanding, mitigating, and predicting emerging zoonotic disease. A primary aim of the activity is to unveil the potential role of natural history specimens in pathogen discovery and mitigation, resulting in new approaches to gather, share, and interpret data and knowledge for deployment in preventing, predicting, and responding to diseases of zoonotic origins (future pandemics). To achieve this, the project will identify gaps in biodiversity and pathobiology data connections, develop possible solutions to close these gaps and enable a more synthetic view of biodiversity and human health, establish a plan for framing an integrated research agenda, and develop a plan for interdisciplinary training and research.

Digital Collections Data and Tracking Disease Workshop 2

Abstract. The COVID-19 pandemic impacted our entire way of life, including how we do science and our understanding of what we need in such situations. The potential role of natural history specimens in pathogen discovery and mitigation is recognized in the museum world (DiEuliis et al. 2016, Dunnum et al., 2017) and by at least some disease ecologists (e.g. Mills and Childs 1998). Renewed efforts to align pathobiology with biodiversity discovery initiatives are critical (Kading and Kingston 2020). Moreover, linking both biodiversity infrastructure and capacity-building more closely to zoonotic (and other) pathogen surveys in biodiverse countries would substantially improve proactive responses to pathogen-related events before they once again wreak havoc across the globe. From a collections and observations point-of-view, what have we learned about our own administrative and scientific processes for gathering and integrating the data and expertise needed, across borders and departments? What problems do our researchers and decision-makers continue to face in addressing the need for access to data, specimens, and expertise for answering key research questions for these events? What new policies and procedures have groups put into place for “next time” or to prevent “next time”? We need to share otherwise tacit or localized experiences so that we can work on how to foster adoption and implementation of practices that change how a local-to-global community ecosystem conducts its science. Please join our session to listen and to add your experiences to inform key elements for moving forward. Our event includes a series of talks, open guided discussion, and graphic recording to capture the conversations visually.

Table of contents

Materials from Workshop at ASM 2024

Speakers' invited talks and our graphic recordings each have their own Zenodo repository as part of this event to support best practices for citiation, credit, and attribution.

  • Workhops Organizers: Cody Thompson, Deborah Paul, Pam Soltis
  • Agenda and Discussion Synthesis Notes: in Google Notes Doc short URL https://tinyurl.com/asm2024path
    • Discussion & Synthesis: See also the Graphic Recordings
  • Speaker Recordings: on Zenodo and on the iDigBio YouTube
  • Welcome & Introduction to Digital Collections Data and Tracking Disease Workshop, Cody Thompson, University of Michigan. (Slides in this repository)

Invited Talks in this Workshop

  • Topic -- A Museum Perspective
    • Museums and Emerging Pathogens in the Americas, Joe Cook, University of New Mexico
    • Museums and pathogens: Challenges, potential, and management, Adam Ferguson, Field Museum of Natural History
    • The UX Side of Extended Specimen Databases, Kelly Speer
    • Preventing the next viral pandemic via elucidation of mammalian reservoirs, Rick White, University of North Carolina-Charlotte
    • Scientific collections and public health surveillance: institutional weaknesses and perspectives from Uruguay, Germán Botto Nuñez, Universidad de la República
    • Building integrated archives for parasite and pathogen discovery
      Kurt Galbreath, Northern Michigan University
    • The Dark Side of the Light: Fireflies, Snails, and Viromes, Oliver Keller, University of Michigan
  • Topic -- Case Studies
    • Generating Genomic Resources for Bats and their Viruses,
      Lexi Frank, University of Minnesota
    • Virome composition in fresh bat guano, frozen and fluid-preserved bat tissues, Verity Mathis, University of Florida
    • Mammalian diversity, health, and other responses to rapid deforestation in the Interior Atlantic Forest, Noé de la Sancha, DePaul University & Field Museum of Natural History
    • Exploring signals of co-diversification among deer mice and Sin Nombre hantavirus, Tommy Herrera University of California-Berkeley
    • Undercover carriers: rodents as hidden reservoirs for pathogenic fungi transmission, Kailey Mahoney, University of Utah
    • Trypanosoma cruzi surveillance using salvage specimens of Mexican free-tailed bats and raccoons in Texas, Ilana Mosley Texas A&M University
    • Surveillance, prevention, and control of viral zoonoses among mammals in a One Health context, Charles Ruprecht, Auburn University
    • MoMaP: An interactive map for visualizing Mongolian mammals and parasites, Litsa Wooten, University of New Mexico
  • Graphic Recordings
    • Live Illustrations for our sessions and group discussions done by Karina Branson of ConverSketch https://www.conversketch.com/

Files

Thompson_ASM2024.pdf

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Additional details

Funding

U.S. National Science Foundation
Infrastructure for Predicting, Understanding, and Mitigating Zoonotic Disease Outbreaks 2037937

Dates

Created
2024-06-09
workshop session introduction