C-COMPASS Example Data

Example Proteomics Dataset for C-COMPASS

This dataset is an example of proteomics data generated from gradient centrifugation. It is provided exclusively to the reviewers of the manuscript titled "C-COMPASS: A User-Friendly Neural Network Tool for Profiling Cell Compartments at Protein and Lipid Levels."

Until the manuscript is accepted, this dataset remains unpublished and is intended solely for testing the functionality of C-COMPASS. Any further use or distribution of the data is strictly prohibited.

C-COMPASS_session.npy: Ready-to-use session that can be opened in C-COMPASS. All processing steps were already performed hers.

C-COMPASS_ProteomeInput.tsv: Complete dataset including Fractionation and TotalProteome data. This can be used to reproduce the analysis. The containing data is equal to the dataset that was used for the research article. Samples with “Gradient” in their names correspond to the fractionation data, while samples labeled “TotalProteome” correspond to the total proteome data. This file should be added to both the Fractionation and TotalProteomes tabs, and the non-relevant samples should be removed from each tab accordingly.

C-COMPASS_MarkerList.txt: This list contains a compatible marker list that can be used to analyze the data from C-COMPASS_ProteomeInput.tsv. It is the same marker list that was used for the research article.