Published May 26, 2020
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Morphological and molecular evidence for two new species of Absidia from Neotropic soil
Authors/Creators
- 1. Post-graduate course in the Biology of Fungi. Department of Mycology. Federal University of Pernambuco. Av. Prof. Nelson Chaves, s/n, 50670-420, Recife, PE, Brazil.
- 2. Environmental Microbiology Lab, Dept. of Agricultural Biological Chemistry, College of Agriculture & Life Sciences, Chonnam National University, Gwangju 61186, Korea.
Description
Lima, Diogo X., Cordeiro, Thalline R. L., De Souza, Carlos A. F., De Oliveira, Rafael J. V., Lee, Hyang B., Souza-Motta, Cristina M., De Azevedo Santiago, André L. C. M. (2020): Morphological and molecular evidence for two new species of Absidia from Neotropic soil. Phytotaxa 446 (1): 61-71, DOI: 10.11646/phytotaxa.446.1.8, URL: http://dx.doi.org/10.11646/phytotaxa.446.1.8
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- urn:lsid:plazi.org:pub:FFA0FFA69018DE429D58FFC0FF21543A
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- http://publication.plazi.org/id/FFA0FFA69018DE429D58FFC0FF21543A
References
- Alastruey-Izquierdo, A., Hoffmann, K., de Hoog, G.S., Rodriguez-Tudela, J.L., Voigt, K., Bibashi, E. & Walther, G. (2010) Species recognition and clinical relevance of the Zygomycetous Genus Lichtheimia (syn. Absidia Pro Parte, Mycocladus). Journal of Clinical Microbiology 48: 2154-2170. https://doi.org/10.1128/JCM.01744-09
- Ariyawansa, H.A., Hyde, K.D., Jayasiri, S.C., Buyck, B., Chethana, K.W.T., Dai, D.Q., Dai, Y.C., Daranagama, D.A., Jayawardena, R.S., Lucking, R., Ghobad-Nejhad, M., Niskanen, T., Thambugala, K.M., Voigt, K., Zhao, R.L., Li, G.-J., Doilom, M., Boonmee, S., Yang, Z.L., Cai, Q., Cui, Y.Y., Bahkali, A.H., Chen, J., Cui, B.K., Chen, J.J., Dayarathne, M.C., Dissanayake, A.J., Ekanayaka, A.H., Hashimoto, A., Hongsanan, S., Jones, E.B.G., Larsson, E., Li, W.J., Li, Q.-R., Liu, J.K., Luo, Z.L., Maharachchikumbura, S.S.N., Mapookm, A., McKenzie, E.H.C., Norphanphoun, C., Konta, S., Pang, K.L., Perera, R.H., Phookamsak, R., Phukhamsakda, C., Pinruan, U., Randrianjohany, E., Singtripop, C., Tanaka, K., Tian, C.M., Tibpromma, S., Abdel-Wahab, M.A., Wanasinghe, D.N., Wijayawardene, N.N., Zhang, J.F., Zhang, H., Abdel-Aziz, F.A., Wedin, M., Westberg, M., Ammirati, J.F., Bulgakov, T.S., Lima, D.X., Callaghan, T.M., Callac, P., Chang, C.-H., Coca, L.F., Dal-Forno, M., Dollhofer, V., Fliegerova, K., Greiner, K., Griffith, G.W., Ho, H-M., Hofstetter, V., Jeewon, R., Kang, J.C., Wen, T.-C., Kirk, P.M., Kytovuori, I., Lawrey, J.D., Xing, J., Li, H., Liu, Z.Y., Liu, X.Z., Liimatainen, K., Lumbsch, T., Matsumura, M., Moncada, B., Nuankaew, S., Parnmen, S., Santiago, A.L.C.M. de A. Sommai, S., Song, Y., de Souza, C.A.F., Souza-Motta, C.M., Su, H.Y., Suetrong, S., Wang, Y., Wei, S.-F., Wen, T.C., Yuan, H.S., Zhou, L.W., Reblova, M., Fournier, J., Camporesi, E., Luangsa-ard, J.J., Tasanathai, K., Khonsanit, A., Thanakitpipattana, D., Somrithipol, S., Diederich, P., Millanes, A.M., Common, R.S., Stadler, M., Yan, J.Y., Li, X., Lee, H.Y., Nguyen, T.T.T., Lee, H.B., Battistin, E., Marsico, O., Vizzini, A., Vila, J., Ercole, E., Eberhardt, U., Simonini, G., Wen, H.-A. & Chen, X.-H. (2015) Fungal diversity notes 111-252-taxonomic and phylogenetic contributions to fungal taxa. Fungal diversity 75 (1): 27-274. http://doi.org/10.1007/s13225-015-0346-5
- Bainier, G. (1903) Sur quelques especes de Mucorinees nouvelles ou peu connues. Bulletin de la Societe mycologique de France 19: 153-172.
- Batista, A.C., Fishman, O., Vascondelos, C.T. & Rocha, I.G. (1961) Leveduras e outros fungos das fezes de ovinos, caprinos, suinos, galinaceos e animais cativos, no Recife. Boletim do Instituto de Micologia da Universidade do Recife 327: 1-27.
- Beauverie, J. (1900) Mycocladus verticillatus (gen. nov. sp. nov.). Annales de l'universitie de Lyon 3: 162-180.
- Benny, G.L. (2008) The methods used by Dr. R.K. Benjamin, and other Mycologists to isolate Zygomycetes. Aliso 26: 37-61. https://doi.org/10.5642/aliso.20082601.08
- Benny, G.L. (2010) Zygomycetes. Available from: http://www.zygomycetes.org (accessed 10 October 2019)
- Berlese, A.N. & De Toni, J.B. (1888) Phycomyceteae. In: Friedlander, R. & Sohn, P.A (Eds.) Saccardo's Sylloge fungorum. Berlin, Germany, pp. 181-322.
- Crous, P.W., Luangsa-ard, J.J., Wingfield, M.J., Carnegie, A.J., Hernandez-Restrepo, M., Lombard, L., Roux, J., Barreto, R.W., Baseia, I.G., Cano-Lira, J.F., Martin, M.P., Morozova, O.V., Stchigel, A.M., Summerell, B.A., Brandrud, T.E., Dima, B., Garcia, D., Giraldo, A., Guarro, J., Gusmao, L.F.P., Khamsuntorn, P., Noordeloos, M.E., Nuankaew, S., Pinruan, U., Rodriguez-Andrade, E., Souza-Motta, C.M., Thangavel, R., van Iperen, A.L., Abreu, V.P., Accioly, T., Alves, J.L., Andrade, J.P., Bahram, M., Baral, H.-O., Barbier, E., Barnes, C.W., Bendiksen, E., Bernard, E., Bezerra, J.D.P., Bezerra, J.L., Bizio, E., Blair, J.E., Bulyonkova, T.M., Cabral, T.S., Caiafa, M.V., Cantillo, T., Colman, A.A., Conceicao, L.B., Cruz, S., Cunha, A.O.B., Darveaux, B.A., da Silva, A.L., da Silva, G.A., da Silva, G.M., da Silva, R.M.F., de Oliveira, R.J.V., Oliveira, R.L., De Souza, J.T., Duenas,M., Evans, H.C., Epifani, F., Felipe, M.T.C., Fernandez-Lopez, J., Ferreira, B.W., Figueiredo, C.N., Filippova, N.V., Flores, J.A., Gene, J., Ghorbani, G., Gibertoni, T.B., Glushakova, A.M., Healy, R., Huhndorf, S.M., Iturrieta-Gonzalez, I., Javan-Nikkhah, M., Juciano, R.F., Jurjevic, Z, Kachalkin, A.V., Keochanpheng, K., Krisai-Greilhuber, I., Li, Y.-C., Lima, A.A., Machado, A.R., Madrid, H., Magalhaes, O.M.C., Marbach, P.A.S., Melanda, G.C.S., Miller, A.N., Mongkolsamrit, S., Nascimento, R.P., Oliveira, T.G.L., Ordonez, M.E., Orzes, R., Palma, M.A., Pearce, C.J., Pereira, O.L., Perrone, G., Peterson, S.W., Pham, T.H.G., Piontelli, E., Pordel, A., Quijada, L., Raja, H.A., Rosas de Paz, E., Ryvarden, L., Saitta, A., Salcedo, S.S., Sandoval-Denis, M., Santos, T.A.B., Seifert, K.A., Silva, B.D.B., Smith, M.E., Soares,A.M., Sommai, S., Sousa, J.O., Suetrong, S., Susca,A., Tedersoo, L., Telleria, M.T., Thanakitpipattana, D., Valenzuela- Lopez, N., Visagie, C.M., Zapata, M. & Groenewald, J.Z. (2018) Fungal Planet description sheets: 785-867. Persoonia: Molecular Phylogeny and Evolution of Fungi 41: 238-417. https://doi.org/10.3767/persoonia.2018.41.12
- Ellis, J.J. & Hesseltine, C.W (1965) The genus Absidia: globose-spored species. Mycologia 57: 222-235. https://doi.org/10.1080/00275514.1965.12018205
- Ellis, J.J. & Hesseltine, C.W. (1966) Species of Absidia with ovoid sporangiospores. II. Sabouraudia 5: 59-77. https://doi.org/10.1080/00362176785190111
- Endres, A.A., Creao-Duarte, A.J. & Hernandez, M.I.M. (2007) Diversity of Scarabaeidae s. str. (Coleoptera) in the Reserva Biologica Guaribas, Mamanguape, Paraiba, Brazil: a comparison between Atlantic Forest and northeast's Tabuleiro. Revista Brasileira de Entomologia 51 (1): 67-71. https://doi.org/10.1590/S0085-56262007000100012
- Flora do Brasil (2020) Flora do Brasil 2020 em construcao. Rio de Janeiro Botanical Garden.Available from: http://floradobrasil.jbrj.gov. br (accessed 10 October 2019)
- Garcia-Hermoso, D., Hoinard, D., Gantier, J.C., Grenouillet, F., Dromer, F. & Dannaoui, E. (2009) Molecular and phenotypic evaluation of Lichtheimia corymbifera (formerly Absidia corymbifera) complex isolates associated with human mucormycosis: rehabilitation of L. ramosa. Journal of clinical microbiology 47 (12): 3862-3870. https://doi.org/10.1128/JCM.02094-08
- Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59: 307-21. https://doi.org/10.1093/sysbio/syq010
- Goes-Neto, A., Loguercio-Leite, C. & Guerrero, R.T. (2005) DNA extraction from frozen field collected and dehydrated herbarium fungal basidiomata: performance of SDS and CTAB-based methods. Biotemas 18: 19-32.
- Hagem, O. (1908) Untersuchungen uber norwegische Mucorineen. Skrifter u.a. Vidensk.-Selsk. Christ. I. Math.-Nat. Kl. No. 7. 45 pp.
- Hesseltine, C.W. & Ellis, J.J. (1964) The genus Absidia: Gongronella and cylindrical-spored species of Absidia. Mycologia 56: 568-601. https://doi.org/10.1080/00275514.1964.12018145
- Hoffmann, K., Discher, S. &Voigt, K. (2007) Revision of the genus Absidia (Mucorales, Zygomycetes) based on physiological,phylogenetic, and morphological characters; thermotolerant Absidia spp. form a coherent group, Mycocladiaceae fam. nov. Mycological Research 111: 1169-1183. https://doi.org/10.1016/j.mycres.2007.07.002
- Hoffmann, K. & Voigt, K. (2009) Absidia parricida plays a dominant role in biotrophic fusion parasitism among mucoralean fungi (Zygomycetes): Lentamyces, a new genus for A. parricida and A. zychae. Plant Biology 10: 537-554. https://doi.org/10.1111/j.1438-8677.2008.00145.x
- Hoffmann, K., Walther, G. & Voigt, K. (2009) Mycocladus vs. Lichtheimia: a correction (Lichtheimiaceae fam. nov., Mucorales, Mucoromycotina). Mycological Research 113 (7): 275-278. https://doi.org/10.1016/j.mycres.2009.02.001
- Hoffmann, K., Pawlowska, J., Walther, G., Wrzosek, M., de Hoog, G.S., Benny, G.L., Kirk, P.M. & Voigt, K. (2013) The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies. Persoonia 30: 57-76. https://doi.org/10.3767/003158513X666259
- Li, G.J, Hyde, K.D., Zhao, R.L., Hongsanan, S., Abdel-Aziz, F.A., Abdel-Wahab, M.A., Alvarado, P, Alves-Silva, G., Ammirati, J.F., Ariyawansa, H.A., Baghela, A., Bahkali, A.H., Beug, M., Bhat, D.J., Bojantchev, D., Boonpratuang, T., Bulgakov, T.S., Camporesi, E., Boro, M.C., Ceska, O., Chakraborty, D., Chen, J.J., Chethana, K.W.T., Chomnunti, P., Consiglio, G., Cui, B.K., Dai, D.Q., Dai,Y.C., Daranagama, D.A., Das, K., Dayarathne, M.C., De Crop, E., de Oliveira, R.J.V., de Souza, C.A.F., de Souza, J.I., Dentinger, B.T.M., Dissanayake, A.J., Doilom, M., Drechsler-Santos, E.R., Ghobad-Nejhad, M., Gilmore, S.P., Goes-Neto, A., Gorczak, M., Haitjema, C.H., Hapuarachchi, K.K., Hashimoto, A., He, M.Q., Henske, J.K., Hirayama, K., Iribarren, M.J., Jayasiri, S.C., Jayawardena, R.S., Jeon, S.J., Jeronimo, G.H., Jesus, A.L., Jones, E.B.G., Kang, J.C., Karunarathna, S.C., Kirk, P.M., Konta, S., Kuhnert, E., Langer, E., Lee, H.S., Lee, H.B., Li, W.J., Li, X.H., Liimatainen, K., Lima, D.X., Lin, C.G., Liu, J.K., Liu, X.Z., Liu, Z.Y., Luangsa-ard, J.J., Lucking, R., Lumbsch, H.T., Lumyong, E., Leano, E.M., Marano, A.V., Matsumura, M., McKenzie, E.H.C., Mongkolsamrit, S., Mortimer, P.E., Nguyen, T.T.T., Niskanen, T., Norphanphoun, C., O'Malley, M.A., Parnmen, S., Pawlowska, J., Perera, R.H., Phookamsak, R., Phukhamsakda, C., Pires-Zottarelli, C.L.A., Raspe, O., Reck, M.A., Rocha, S.C.O., Santiago, A.L.C.M de A., de Senanayake, I.C., Setti, L., Shang, Q.J., Singh, S.K.,. Sir, E.B., Solomon, K.V., Song, J., Srikitikulchai, P., Stadler, M., Suetrong, S., Takahashi, H., Takahashi, T., Tanaka, K., Tang, L.P., Thambugala, K.M., Thanakitpipattana, D., Theodorou, M.K., Thongbai, B., Thummarukcharoen, T., Tian, Q., Tibpromma, S., Verbeken, A., Vizzini, A., Vlasak, J., Voigt, K., Wanasinghe, D.N., Wang, Y., Weerakoon, G., Wen, H.A., Wen, T.C., Wijayawardene, N.N., Wongkanoun, S., Wrzosek, M., Xiao, Y.P., Xu, J.C., Yan, J.Y., Yang, J., Yang, S.D., Hu, Y., Zhang, J.F., Zhao, J., Zhou, L.W., Persoh, D., Phillips, A.J.L. & Maharachchikumbura, S.S.N. (2016) Fungal diversity notes 253-366: taxonomic and phylogenetic contributions to fungal taxa. Fungal diversity 78 (1): 1-237. https://doi.org/10.1007/s13225-016-0366-9
- Ling-Young, M. (1930) Les Mucorinees d'auvergne et specialement los Mucorinees du sol. Revue generale de botanique 42: 730-752.
- Linnemann, G. (1936) Beitrag zu einer Flora der Mucorineae Marburgs. Flora 130: 176-217. https://doi.org/10.1016/S0367-1615(17)31859-1
- Maerz, A. & Paul, M.R. (1950) A dictionary of color. McGraw-Hill book Company, USA, 207 pp.
- Milne, I., Wright, F., Rowe, G., Marshall, D., Husmeier, D. & McGuire, G. (2004) TOPALi: Software for automatic identification of recombinant sequences within DNA multiple alignments. Bioinformatics 20: 1806-1807. https://doi.org/10.1093/bioinformatics/bth155
- Naumov, N.A. (1935) Opredelitel Mukorovych (Mucorales). Second Rev. Ed. Botanical Institute, Academy of Sciences, USSR., Moscow and Leningrad, 140 pp.
- Oliveira, R.J.V., Lima, T.E.F., Cunha, I.B., Coimbra, V.R.M., Silva, G.A., Bezerra, J.L. & Cavalcanti, M.A.Q. (2014) Corniculariella brasiliensis, a new species of coelomycetes in the rhizosphere of Caesalpiniaechinata (Fabaceae, Caesalpinioideae) in Brazil. Phytotaxa 178 (3): 197-204. https://doi.org/10.11646/phytotaxa.178.3.5
- Richardson, M. (2009) The ecology of the Zygomycetes and its impact on environmental exposure. Clinical Microbiology and Infection 15: 2-9. https://doi.org/10.1111/j.1469-0691.2009.02972.x
- Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61 (3): 539-542. https://doi.org/10.1093/sysbio/sys029
- Santiago, A.L.C.M. de A., Hoffmann, K., Lima, D.X., Oliveira, R.J.V., Vieira, H.E.E, Malosso, E., Maia, L.C. & da Silva, G.A. (2014) A new species of Lichtheimia (Mucoromycotina, Mucorales) isolated from Brazilian soil. Mycologial Progress 13 (2): 343-352. https://doi.org/10.1007/s11557-013-0920-8
- Silva, M.H., Filho, L.O.C., Oliveira, A.F.M. & Almeida-Cortez, J.S. (2011) Ocorrencia de galhas em especies de Croton do Parque Nacional Vale do Camtibau (PE). Revista Brasileira de Geografia Fisica 3: 510-519. https://doi.org/10.26848/rbgf.v4i3.232626
- Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1596-1599. https://doi.org/10.1093/molbev/msm092
- Vanova, M. (1968) Contribution to the taxonomy of the genus Absidia (Mucorales) I. Absidia macrospora sp. nov. Ceska Mykologie 22 (4): 296-300.
- van Tieghem, P. (1876) Troisieme memoire sur les Mucorinees. Annales des Sciences Naturelles Botanique series VI, 4: 312-399. https://doi.org/10.1007/978-3-642-60268-9_24
- van Tuinen, D., Zhao, B. & Gianinazzi-Pearson, V. (1998) PCR in studies of AM fungi: from primers to application. In: Varma, A.K. (Ed.) Mycorrhizal manual. Springer, Berlin, pp. 387-399. https://doi.org/10.1007/978-3-642-60268-9_24
- Vuillemin, P. (1903a) Importance taxonomique de l'appareil zygospore des Mucorinees. Bulletin de la Societe mycologique de France 19: 106-118.
- Vuillemin, P. (1903b) Le genre Tieghemella et la serie de Absidees. Bulletin de la Societe mycologique de France 19: 119-127.
- Wanasinghe, D.N., Phukhamsakda, C., Hyde, K.D., Jeewon, R., Lee, H.B., Gareth Jones, E.B., Tibpromma, S., Tennakoon, D.S., Dissanayake, A.J., Jayasiri, S.C., Gafforov, Y., Camporesi, E., Bulgakov, T.S., Ekanayake, A.H., Perera, R.H., Samarakoon, M.C., Goonasekara, I.D., Mapook, A., Li, J.W., Senanayake, I.C., Li, J., Norphanphoun, C., Doilom, M., Bahkali, A.H., Xu, J., Mortimer, P.E., Tibell, L., Tibell, S. & Karunarathna, S.C. (2018) Fungal diversity notes 709-839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae. Fungal diversity 89: 1-236. https://doi.org/10.1007/s13225-018-0395-7
- Walther, G., Pawlowska, J., Alastruey-Izquierdo, A., Wrzosek, M., Rodriguez-Tudela, J.L., Dolatabadi, S., Chakrabarti, A. & de Hoog, G.S. (2013) DNA barcoding in Mucorales: an inventory of biodiversity. Persoonia 30: 11-47. https://doi.org/10.3767/003158513X665070
- White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Ed.) PCR protocols: a guide to methods and applications. Academic, San Diego, pp. 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Zhang, T.Y., Yu, Y., Zhu, H., Yang, S.Z., Yang, T.M., Zhang, M.Y. & Zhang, Y.X. (2018) Absidia panacisoli sp. nov., isolated from rhizosphere of Panax notoginseng. International journal of systematic and evolutionary microbiology 68 (8): 2468-2472. https://doi.org/10.1099/ijsem.0.002857