Ersilia Model Hub: a repository of AI/ML models for infectious and neglected tropical diseases

What's Changed

• Api branch by @patrickwalsh26 in https://github.com/ersilia-os/ersilia/pull/1727
• API Fixes by @patrickwalsh26 in https://github.com/ersilia-os/ersilia/pull/1729
• build(deps): bump actions/upload-artifact from 4.5.0 to 4.6.2 by @dependabot[bot] in https://github.com/ersilia-os/ersilia/pull/1668
• build(deps): bump GrantBirki/json-yaml-validate from 3.3.0 to 3.3.2 by @dependabot[bot] in https://github.com/ersilia-os/ersilia/pull/1667
• build(deps): bump GrantBirki/comment from 2.1.0 to 2.1.1 by @dependabot[bot] in https://github.com/ersilia-os/ersilia/pull/1666
• removed smiles mentions and changed to input or data by @GemmaTuron in https://github.com/ersilia-os/ersilia/pull/1736
• refactor API by @GemmaTuron in https://github.com/ersilia-os/ersilia/pull/1739
• Add column file copy functionality from container, add check f… by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1748
• Chore/test command revision by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1749
• hotfix: missing keys in final json report (#1752) by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1753
• hotfix: using conda run for exectuing any conda related command by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1755
• fixed getting run_columns directly from docker container by @miquelduranfrigola in https://github.com/ersilia-os/ersilia/pull/1757
• feat: async endpoint testing in test command by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1758
• fixing catalog inconsistencies by @miquelduranfrigola in https://github.com/ersilia-os/ersilia/pull/1759
• Log a failure when can_delete is False by @Lehcar in https://github.com/ersilia-os/ersilia/pull/1776
• Redundant imports fix + fix typo in function name by @bodoque-01 in https://github.com/ersilia-os/ersilia/pull/1766
• Bump GrantBirki/json-yaml-validate from 3.3.2 to 4.0.0 by @dependabot[bot] in https://github.com/ersilia-os/ersilia/pull/1774
• Bump actions/setup-python from 5 to 6 by @dependabot[bot] in https://github.com/ersilia-os/ersilia/pull/1764
• (docs): Fix email link format in Code of Conduct by @BolajiAyodeji in https://github.com/ersilia-os/ersilia/pull/1773
• Bump peter-evans/slash-command-dispatch from 4.0.0 to 5.0.0 by @dependabot[bot] in https://github.com/ersilia-os/ersilia/pull/1786
• Bump actions/checkout from 4.2.2 to 6.0.0 by @dependabot[bot] in https://github.com/ersilia-os/ersilia/pull/1785
• feat: integrating isaura, making harmonized CLI and logger by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1777
• refac(major): depracting bentoml as model backend service by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1814
• refac; code cleaup for service and packing steps (appears to be legac… by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1816
• hotfix: better conda sourcing, solves test-docker image in model work… by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1819
• Hotfix test cmd by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1820
• Hotfix test cmd by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1821
• refac: removing udocker legacy, add robustness test in test command, … by @Abellegese in https://github.com/ersilia-os/ersilia/pull/1823

New Contributors

• @patrickwalsh26 made their first contribution in https://github.com/ersilia-os/ersilia/pull/1727
• @bodoque-01 made their first contribution in https://github.com/ersilia-os/ersilia/pull/1766
• @BolajiAyodeji made their first contribution in https://github.com/ersilia-os/ersilia/pull/1773

Full Changelog: https://github.com/ersilia-os/ersilia/compare/v0.1.47...v0.1.56