Published September 30, 2024
| Version v1.8.7
Software
Open
AstrobioMike/GToTree: GToTree v1.8.7
Description
improvements to the "Universal" Hug et al. gene set thanks so much to @molly-kholodova digging in and reaching out!
- PF00181 ("Ribosomal_L2") was changed to PF03947 ("Ribosomal_L2_C")
- the C-terminal (which PF03947 covers) is better conserved
- PF00827 ("Ribosomal_L15") was changed to PF00828 ("Ribosomal_L27A")
- PF00827 was archaea/euk only, PF00828 holds the bac/arc L15 also
- PF17135 ("Ribosomal_L18") was changed to PF00861 ("Ribosomal_L18p")
- the PF00861 model is better distributed
- PF00181 ("Ribosomal_L2") was changed to PF03947 ("Ribosomal_L2_C")
gtt-gen-SCG-HMMsnow reports which version of PFAM was used (prints it out to the terminal and writes it to a file)
Full Changelog: https://github.com/AstrobioMike/GToTree/compare/v1.8.6...v1.8.7
Files
AstrobioMike/GToTree-v1.8.7.zip
Files
(162.3 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:03caa4ef09b61207ec5d5418f449711c
|
162.3 kB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/AstrobioMike/GToTree/tree/v1.8.7 (URL)