MouseCHD

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Published September 28, 2024 | Version v7
Model Open

MouseCHD Napari plugin

Authors/Creators

  • 1. ROR icon Institut Pasteur

Description

MouseCHD is a pipeline for heart segmentation and detection of mouse congenital heart defects. This dataset include assets of MouseCHD project:

  • assets.zip: a sample and thumbnail for MouseCHD Napari plugin
  • HeartSeg.zip: heart segmentation models
  • Classification.zip: classification models
  • mousechd.sif: Apptainer image to run MouseCHD package

Preprint: https://www.biorxiv.org/content/10.1101/2024.04.06.588383v1.abstract

Code: https://github.com/hnguyentt/MouseCHD

Plugin code: https://github.com/hnguyentt/mousechd-napari

Files

assets.zip

Files (8.2 GB)

Name Size Download all
md5:61e07f600e48a348b2f25c39c32095ec
254.6 MB Preview Download
md5:2f9a6b1812429092a023b88c2f0db014
5.0 MB Preview Download
md5:1d8de9f97a23b736076356afbffc5b96
1.2 GB Preview Download
md5:dbd492df7c1c530237a14188f93935e9
6.8 GB Download

Additional details

Software

Repository URL
https://github.com/hnguyentt/mousechd-napari
Programming language
Python
Development Status
Active