rDNA 18S V9 ASVs (DADA2) from the Tara Pacific Expedition
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Henry, Nicolas1
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Mahé, Frédéric2
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Berney, Cédric
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Poulain, Julie
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Romac, Sarah1
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Bourdin, Guillaume
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Ruscheweyh, Hans-Joachim3
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Salazar, Guillem
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Belser, Caroline
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Clayssen, Quentin4, 3
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Hume, Benjamin5, 6
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Boissin, Emilie
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Galand, Pierre E.
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Pesant, Stéphane7
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Lombard, Fabien
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Armstrong, Eric
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Lang-Yona, Naama
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McMinds, Ryan
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Vega Thurber, Rebecca
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Moulin, Clémentine
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Agostini, Sylvain
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Banaigs, Bernard8
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Boss, Emmanuel
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Bowler, Chris9
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Douville, Eric10
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Flores, J. Michel
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Forcioli, Didier
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Furla, Paola
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Gilson, Eric11
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Reynaud, Stéphanie12
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Sullivan, Matthew
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Thomas, Olivier P.
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Troublé, Romain
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Zoccola, Didier12
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Planes, Serge
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Allemand, Denis12
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Sunagawa, Shinichi
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Voolstra, Christian R.
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Wincker, Patrick13
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de Vargas, Colomban
- 1. Station Biologique de Roscoff
- 2. CIRAD
- 3. ETH Zurich
- 4. DNA Script SAS
- 5. University of Konstanz
- 6. King Abdullah University of Science and Technology
- 7. European Bioinformatics Institute
- 8. INSERM
- 9. CNRS Délégation Paris B
- 10. CEA Saclay
- 11. Université de Nice Sophia Antipolis
- 12. Centre Scientifique de Monaco
- 13. Université Paris-Saclay
Description
This repository contains datasets describing the DADA2 ASVs generated from the Tara Pacific expedition V9 18S rDNA metabarcoding sequencing data. The ASVs were generated were generated using the nf-core workflow ampliseq. Please refer to the readme file for more details.
Notes
Special thanks to the Tara Ocean Foundation, the R/V Tara crew and the Tara Pacific Expedition Participants (https://doi.org/10.5281/zenodo.3777760). We are keen to thank the commitment of the following institutions for their financial and scientific support that made this unique Tara Pacific Expedition possible: CNRS, PSL, CSM, EPHE, Genoscope, CEA, Inserm, Université Côte d'Azur, ANR, agnès b., UNESCO-IOC, the Veolia Foundation, the Prince Albert II de Monaco Foundation, Région Bretagne, Billerudkorsnas, AmerisourceBergen Company, Lorient Agglomération, Oceans by Disney, L'Oréal, Biotherm, France Collectivités, Fonds Français pour l'Environnement Mondial (FFEM), Etienne Bourgois, and the Tara Ocean Foundation teams. Tara Pacific would not exist without the continuous support of the participating institutes. The authors also particularly thank Serge Planes, Denis Allemand, and the Tara Pacific consortium.
Files
18sv9_ampliseq-v1.0.0.zip
Files
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Additional details
Related works
- Cites
- Software: 10.5281/zenodo.10519258 (DOI)
- Is variant form of
- Dataset: 10.5281/zenodo.10822169 (DOI)