JWST Calibration Pipeline

What's Changed

• add Brett Graham to citation by @braingram in https://github.com/spacetelescope/jwst/pull/8627
• JP-3631: remove direct setting of self.skip within calibration steps by @emolter in https://github.com/spacetelescope/jwst/pull/8600
• RTD: Restore tags for all branches by @jhunkeler in https://github.com/spacetelescope/jwst/pull/8633
• Adding version information to the landing page by @jhunkeler in https://github.com/spacetelescope/jwst/pull/8642
• refactor msa fail/nofail and association duplicate tests to not use caplog by @braingram in https://github.com/spacetelescope/jwst/pull/8628
• move ruff and bandit checks to pre-commit by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8646
• JP-3687: fix outlier_detection failures when run outside pipeline by @emolter in https://github.com/spacetelescope/jwst/pull/8645
• Remove some unused modules by @AlexKurek in https://github.com/spacetelescope/jwst/pull/8630
• RTD: Clear the dirty git index flag by @jhunkeler in https://github.com/spacetelescope/jwst/pull/8644
• remove non-working or out-dated scripts by @braingram in https://github.com/spacetelescope/jwst/pull/8619
• JP-3634: Fix for custom WCS unit test by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8620
• docs(README): link CRDS PUB by @guspan-tanadi in https://github.com/spacetelescope/jwst/pull/8658
• lint jwst/fits_generator and jwst/associations by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8652
• unlink deleted scripts from build metadata by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8659
• JP-3636: Fix crash in tweakreg due to MalformedPolygonError by @mcara in https://github.com/spacetelescope/jwst/pull/8657
• JP-3312 Support Update from RHEL7 to RHEL9 by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8653
• JP-3657: Part 1 of a NIRSpec BOTS speedup by @t-brandt in https://github.com/spacetelescope/jwst/pull/8609
• JP-3668: Move tweakreg into stcal by @emolter in https://github.com/spacetelescope/jwst/pull/8624
• JP-3547: Flux conservation for spectral resampling by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8596
• [SCSB-155] build with Numpy 2.0 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8527
• fix bug in AmiAverageStep spec that prevents step creation by @braingram in https://github.com/spacetelescope/jwst/pull/8677
• JP-3628: Revise coron3 alignment step by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8643
• Outlier detection refactoring by @braingram in https://github.com/spacetelescope/jwst/pull/8613
• Reset 'seen' flag in log watcher after check by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8686
• JP-3696: Ensure EMICORR correction is never NaN by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8675
• replace usage of copy_arrays=True with memmap=False by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8660
• Remove stsci.image dependency by @braingram in https://github.com/spacetelescope/jwst/pull/8663
• JP-3679: Separate resample_spec parameters from resample step by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8622
• JP-3444: update tso photometry to use ApertureStats by @jemorrison in https://github.com/spacetelescope/jwst/pull/8672
• JP-2928: Update NIRSpec IRS2 detector1 test to use flight data by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8687
• don't build for python 3.13 by @braingram in https://github.com/spacetelescope/jwst/pull/8691
• update test to allow easier deprecation of ignore_version_mismatch by @braingram in https://github.com/spacetelescope/jwst/pull/8693
• [SCSB-169] add user input to specify CRDS_CONTEXT by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8702
• [SCSB-170] pin Python<3.13 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8703
• update dep for stcal to released version by @braingram in https://github.com/spacetelescope/jwst/pull/8706
• TST: Use photutils nightly wheel by @pllim in https://github.com/spacetelescope/jwst/pull/8701
• Documentation typo by @tapastro in https://github.com/spacetelescope/jwst/pull/8700
• bump stpipe by @braingram in https://github.com/spacetelescope/jwst/pull/8713
• Update log messages containing newlines by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8696
• Fix a typo in load_custom_wcs by @izkgao in https://github.com/spacetelescope/jwst/pull/8698
• JP-3702: Fix filenames for level3 NIRSpec by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8699
• Add changelog to docs by @braingram in https://github.com/spacetelescope/jwst/pull/8716
• JP-3547: Fix MIRI array sizing for multiple inputs and pixel ratio != 1 by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8727
• JP-3719: Fix names for intermediate spectral outlier detection files by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8735
• JP-3649 Fix cube build error when called from mrs_imatch and add deprecated warning for mrs_imatch by @jemorrison in https://github.com/spacetelescope/jwst/pull/8728
• JP-3727: changed psfalign product from quadmodel to cubemodel by @emolter in https://github.com/spacetelescope/jwst/pull/8747
• JP-3690: Switch from ModelContainer to ModelLibrary for image3 pipeline by @emolter in https://github.com/spacetelescope/jwst/pull/8683
• Update regression tests to remove missing files from tests by @tapastro in https://github.com/spacetelescope/jwst/pull/8730
• JP-3570: Match NaNs and DO_NOT_USE flags by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8557
• update pull request checklist by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8670
• JP-3729: log version and crds context at end of step/pipeline runs by @braingram in https://github.com/spacetelescope/jwst/pull/8760
• JP-3730: Re-enable saving of blot models during outlier detection by @emolter in https://github.com/spacetelescope/jwst/pull/8758
• Revert "JP-3729: log version and crds context at end of step/pipeline runs" by @braingram in https://github.com/spacetelescope/jwst/pull/8768
• JP-3731: Update association path warning message. by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8752
• JP-3729: report jwst version at end of Step.run by @braingram in https://github.com/spacetelescope/jwst/pull/8769
• JP-3654: NSClean subarray speedup by @t-brandt in https://github.com/spacetelescope/jwst/pull/8745
• JP-3738: Subtract pedestal dark for MIRI MRS when constructing selfcal minimum by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8771
• JP-3669: 'OLS' Conditional Read Noise Recalculation for CHARGELOSS by @kmacdonald-stsci in https://github.com/spacetelescope/jwst/pull/8697
• JP-3743: Make outlier detection respect weights for in-memory models by @emolter in https://github.com/spacetelescope/jwst/pull/8777
• JP-3701: Blend models by @braingram in https://github.com/spacetelescope/jwst/pull/8759
• Remove multiline logger by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8781
• rename variable to silence sonarscan by @braingram in https://github.com/spacetelescope/jwst/pull/8784
• JP-3639: Implement 1/f noise correction for ramp data by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8669
• JP-3551: Exclude overlapping background candidates by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8744
• Fixed filename conflicts in badpix_selfcal test by @emolter in https://github.com/spacetelescope/jwst/pull/8792
• allow stdatamodels 2.1.0 by @braingram in https://github.com/spacetelescope/jwst/pull/8797
• adjust tolerances for coron registration by @braingram in https://github.com/spacetelescope/jwst/pull/8717
• JP-3733 remove setting pixel_replace.save to True in calwebb_spec3 by @jemorrison in https://github.com/spacetelescope/jwst/pull/8765
• JP-3489: Update association expname docs by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8789
• JP-3667: Run nsclean step on imprint and background association members by @hayescr in https://github.com/spacetelescope/jwst/pull/8786
• Fix output collisions in clean_flicker_noise tests by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8805
• pin stcal>=1.9.0,<1.10.0 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8808
• JP-3658: JWST Accommodation of the Ramp Fitting Likelihood Algorithm by @kmacdonald-stsci in https://github.com/spacetelescope/jwst/pull/8631
• JP-3593: 2nd group saturation part 2 by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8731
• JP-3305: New association candidate type to group mosaic tiles across targets by @tapastro in https://github.com/spacetelescope/jwst/pull/8798
• Update citations file for build 11.1 by @nden in https://github.com/spacetelescope/jwst/pull/8807
• JP-3564: Rebase nrs deepcopy by @nden in https://github.com/spacetelescope/jwst/pull/8793
• JP-3667: Add safeguards for NSClean on background/imprint members by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8809
• JP-3364 allow wcs shifts for IFU individual exposures in cube_build by @jemorrison in https://github.com/spacetelescope/jwst/pull/8720
• JP-3695: Clean up unnecessary copies by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8676
• JP-3588: Use Pastasoss datamodel for NIRISS SOSS transform solution by @tapastro in https://github.com/spacetelescope/jwst/pull/8763
• Update coron tests for numpy 2 compatibility by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8812
• update metadata for release 1.16.0 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8810

New Contributors

• @AlexKurek made their first contribution in https://github.com/spacetelescope/jwst/pull/8630
• @guspan-tanadi made their first contribution in https://github.com/spacetelescope/jwst/pull/8658

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.15.1...1.16.0