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Published September 11, 2024 | Version 0.4.0
Software Open

neurostuff/NiMARE: 0.4.0

Creators

  • 1. Florida International University
  • 2. University of Texas at Austin
  • 3. Big Data Institute, University of Oxford
  • 4. Neurology and Neurosurgery, McGill University
  • 5. Neuroscience Program, University of Iowa
  • 6. Department of Psychology, Stanford University
  • 7. Department of Neuroscience and Biomedical Engineering, Aalto University
  • 8. National Institute on Aging
  • 9. National Institute of Mental Health
  • 10. Auburn University
  • 11. Montreal Neurological Institute, McGill University
  • 12. MIT
  • 13. Max Planck Institute for Human Cognitive and Brain Sciences
  • 14. Heinrich-Heine-Universität Düsseldorf
  • 15. Department of Psychology, University of Texas at Austin

Description

<!-- Release notes generated using configuration in .github/release.yml at main -->

This version adds a new fixed effects meta-analytic algorithm, Hedge's g, where one can estimate effect size. Also several semi-critical bug fixes for accurately reporting the z-values in the Stouffer's test.

What's Changed

🎉 Exciting New Features

  • [ENH] Add Fixed Effects Meta-Analysis with Hedges' g by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/894
  • [ENH] Add t-statistic images as valid targets in ImageTransformer by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/895

🐛 Bug Fixes

  • [FIX] bump pymare for rounding issue by @jdkent in https://github.com/neurostuff/NiMARE/pull/897
  • [FIX] Add support for IBMA estimators with t-statistic images in Reports by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/896
  • [FIX] Fix the correlation matrix computation in Stouffers and Reports by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/901
  • [FIX] bump pymare version to fix z values by @jdkent in https://github.com/neurostuff/NiMARE/pull/904

Other Changes

  • [REF] Compute correlation matrix in signal voxels by @JulioAPeraza in https://github.com/neurostuff/NiMARE/pull/889
  • [REF] optimize get_studies_by_mask by @jdkent in https://github.com/neurostuff/NiMARE/pull/891
  • [MAINT] hyphen no longer supported by @jdkent in https://github.com/neurostuff/NiMARE/pull/899
  • [MAINT] run benchmarking on estimators by @jdkent in https://github.com/neurostuff/NiMARE/pull/900
  • [MAINT] update workflow and fix example by @jdkent in https://github.com/neurostuff/NiMARE/pull/905

Full Changelog: https://github.com/neurostuff/NiMARE/compare/0.3.0...0.4.0rc1

Files

neurostuff/NiMARE-0.4.0.zip

Files (16.1 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/neurostuff/NiMARE/tree/0.4.0 (URL)