A probabilistic method (cUps) for classifying the malaria var genes into ups groups

This release includes the code used for the study "Classifying the malaria parasite var genes into ups groups" introduced at Chapter 5 of my PhD thesis. The method described in this chapter forms part of a larger manuscript that is now on bioRxiv. 

The preprint is available at https://www.biorxiv.org/content/10.1101/2023.11.05.565723v1.

This release is an archive for the GitHub repository at https://github.com/qianfeng2/cUps.