Published October 20, 2017
| Version v1
Journal article
Restricted
A review of the genus Brachysira in Ireland with the description of Brachysira praegeri and Brachysira conamarae, new raphid diatoms (Bacillariophyceae) from high status waterbodies
Authors/Creators
Description
Kennedy, Bryan, Allott, Norman (2017): A review of the genus Brachysira in Ireland with the description of Brachysira praegeri and Brachysira conamarae, new raphid diatoms (Bacillariophyceae) from high status waterbodies. Phytotaxa 326 (1): 1-27, DOI: 10.11646/phytotaxa.326.1.1, URL: http://dx.doi.org/10.11646/phytotaxa.326.1.1
Files
Restricted
The record is publicly accessible, but files are restricted. <a href="https://zenodo.org/account/settings/login?next=https://zenodo.org/records/13699655">Log in</a> to check if you have access.
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:FFD7B6674E65FFFF0162FFEFFFB5AF41
- URL
- http://publication.plazi.org/id/FFD7B6674E65FFFF0162FFEFFFB5AF41
References
- Aherne, J. & Farrell, E.P. (2002) Deposition of sulphur, nitrogen and acidity in precipitation over Ireland: chemistry, spatial distribution and long-term trends. Atmospheric Environment 36: 1379-1389. https://doi.org/10.1016/S1352-2310(01)00507-6
- Alfinito, S. & Lange-Bertalot, H. (2013) Contribution to the knowledge of the freshwater algae of Sierra Leone (Tropical West Africa): diatoms from Loma Mountains and Bumbuna Falls, the Northern Province. Biodiversity Journal 4 (1): 135-178.
- Anderson, K., Fate, M., Ching-Han, E.H., Lorenz, K., Lazarus, K., Kociolek, J.P. & Lowe, R.L. (2013) Algal diversity in, and the description of three new diatom (Bacillariophyta) species from, Lake of the Clouds, Porcupine Mountains Wilderness State Park, Michigan USA. The Michigan Botanist 52 (1-2): 3-24.
- Antoniades, D., Hamilton, P.B., Douglas, M.S.V. & Smol, J.P. (2008) Diatoms of North America: The freshwater floras of Prince Patrick, Ellef Ringnes and northern Ellesmere Islands from the Canadian Arctic Archipelago. Iconographia Diatomologica 17: 1-649.
- Battarbee R.W., Simpson, G.L., Bennion, H. & Curtis, C. (2011) A reference typology of low alkalinity lakes in the UK based on preacidification diatom assemblages from lake sediment cores. Journal of Paleolimnology 45: 489-505. https://doi.org/10.1007/s10933-010-9426-4
- Besse-Lototskaya, A., Verdonschot, P.F.M., Coste, M. & Van de Vijver, B. (2011) Evaluation of European diatom trophic indices. Ecological Indicators 11: 456-467. https://doi.org/10.1016/j.ecolind.2010.06.017
- Burton, A.W. & Aherne, J. (2012) Changes in the Chemistry of Small Irish lakes. Ambio 41: 170-179. https://doi.org/10.1007/s13280-011-0177-x
- Camburn, K.E. & Charles, D.F. (2000) Diatoms of Low-Alkalinity Lakes in the Northeastern United States. Academy of Natural Sciences of Philadelphia, Special Publication 18, 152 pp.
- Cantonati, M. & Lange-Bertalot, H. (2011) Diatom monitors of close-to-pristine, very-low alkalinity habitats: three new Eunotia species from springs in Nature Parks of the south-eastern Alps. Journal of Limnology 70: 13. https://doi.org/10.4081/jlimnol.2011.209
- CEN EN 13946 (2003) Water Quality - Guidance Standard for the Routine Sampling and Pretreatment of Benthic Diatoms from Rivers. Comite Europeen de Normalisation. Geneva.
- CEN EN 14407 (2004) Water Quality - Guidance standard for the identification, enumeration and interpretation of benthic diatom samples from rivers. Comite Europeen de Normalisation. Geneva.
- Chen, G., Dalton, C., Leira, M. & Taylor, D. (2008) Diatom-based total phosphorus (TP) and pH transfer functions for the Irish Ecoregion. Journal of Paleolimnology 40: 143-163. https://doi.org/10.1007/s10933-007-9148-4
- Compere, P. (1986) Algues recoltees par J. Leonard dans le desert de Libye. Bulletin du Jardin Botanique de Belgique 56: 9-50. https://doi.org/10.2307/3667756
- Compere, P. (1988) Brachysira microcephala (Grunow) Compere nom correct de "Navicula exilis" Grunow 1860 non Kutzing 1844. Memoires de la Societe Royale de Botanique de Belgique 10: 9-11.
- Czarnecki, D.B. (1994) The freshwater diatom culture collection at Loras College, Dubuque, Iowa. Memoirs of the California Academy of Sciences 17: 155-173.
- DeNicola, D.M., Eyto, E.de., Wemaere, A. & Irvine, K. (2004) Using epilithic algal communities to assess the trophic status in Irish lakes. Journal of Phycology 40: 481-495. https://doi.org/10.1111/j.1529-8817.2004.03147.x
- Enache, M.D., Paterson, A.M. & Cumming, B.F. (2011) Changes in diatom assemblages since pre-industrial times in 40 reference lakes from the Experimental Lakes Area (northwestern Ontario, Canada). Journal of Paleolimnology 46: 1-15. https://doi.org/10.1007/s10933-011-9504-2
- EPA (2006) EU Water Framework Directive Monitoring Programme. Environmental Protection Agency. Wexford. Ireland.
- Fallu, M.A., Allaire, N. & Pienitz, R. (2000) Freshwater diatoms from northern Quebec and Labrador (Canada): Species-environment relationships in lakes of boreal forest, forest-tundra and tundra regions. J. Cramer, Berlin, Stuttgart. Bibliotheca Diatomologica 45: 200 pp.
- Flower, R.J. (2005) A taxonomic and ecological study of diatoms from freshwater habitats in the Falkland Islands, South Atlantic. Diatom Research 20: 23-96. https://doi.org/10.1080/0269249X.2005.9705620
- Foged, N. (1977) Freshwater Diatoms in Ireland. Bibliotheca Phycologica 34: 1-211.
- Grunow, A. (1867) Reise Seiner Majestat Fregatte Novara um die Erde. Biotanischer Teil. Band 1. Algen. Wien, aus der Kaiserlich- Koniglichen Hof-und Staasdruckerei.
- Guiry, M.D. & Guiry, G.M. (2016) AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. Available from: http://www.algaebase.org (accessed 1 December 2016)
- Hamilton, P. (2010) Brachysira microcephala, In Diatoms of the United States. Available from: http://westerndiatoms.colorado.edu/taxa/ species/brachysira_microcephala (accessed 1 December 2016)
- Hamilton, P.B., Poulin, M., Charles, D.F. & Angell, M. (1992) Americanarum Diatomarum Exsiccata: CANA, voucher slides from eight acidic lakes in northeastern North America. Diatom Research 7 (1): 25-36. https://doi.org/10.1080/0269249X.1992.9705195
- Hartley, B., Ross, R. & Williams, D.M. (1986) A check-list of the freshwater, brackish and marine diatoms of the British Isles and adjoining coastal waters. Journal of the Marine Biological Association of the United Kingdom 66 (3): 531-610. https://doi.org/10.1017/S0025315400042235
- Hofmann, G., Werum, M. & Lange-Bertalot, H. (2013) Diatomeen im Susswasser-Benthos von Mitteleuropa. Bestimmungsflora Kieselalgen fur die okologische Praxis. Uber 700 der haufigsten Arten und ihre Okologie. 2. korrigierte Auflage. Koeltz Scinetific Books, Konigstein.
- Juggins, S., Kelly, M., Allott, T., Kelly-Quinn, M. & Monteith, D. (2016) A Water Framework Directive-compatible metric for assessing acidification in UK and Irish rivers using diatoms. Science of The Total Environment 568: 671-678. https://doi.org/10.1016/j.scitotenv.2016.02.163
- Kelly, M., Acs, E., Bertrin, V., Bennion, H., Borics, G., Burgess, A., Denys, L., Ecke, F., Kahlert, M., Karjalainen, S. M., Kennedy, B., Marchetto, A., Morin, S., Piciniska-Faltynowicz, J., Philips, J., Schonfelder, I., Schonfelder, J., Urbanic, G., van Dam, H. & Zalewski, T. (2014) Water Framework Directive Intercalibration Technical Report: Phytobenthos ecological assessment methods. Luxembourg: Publications Office of the European Union, 135 pp. https://doi.org/10.2788/7466
- Kopalova, K., Zidarova, R. & Van de Vijver, B. (2016) Four new monoraphid diatom species (Bacillariophyta, Achnanthaceae) from the Maritime Antarctic Region. European Journal of Taxonomy 217. https://doi.org/10.5852/ejt.2016.217
- Krammer, K. & Lange-Bertalot, H. (1985) Naviculaceae Neue und wenig bekannte Taxa, neue Kombinationen und Synonyme sowie Bemerkungen zu einigen Gattungen. Bibliotheca Diatomologia 9: 1-230.
- Krammer, K. & Lange-Bertalot, H. (2000) Bacillariophyceae, Part 5. English and French Translation of the Keys. VEB Gustav Fischer Verlag, Jena, 311 pp.
- Kulikovskiy, M.S., Lange-Bertalot, H., Witkowski, A., Dorofeyuk, N.I. & Genkal, S.I. (2010) Diatoms from Sphagnum bogs of the world I. Nur bog in northern Mongolia In: Lange-Bertalot, H. & Kociolek, P. (Eds.) J. Cramer, Gebruder Borntraeger, Stuttgart. Bibliotheca Diatomologica 55: 1-326.
- Kutzing, F.T. (1836) Algarum Aquae Dulcis Germanicarum. Decas XVI. Collegit Fridericus Traugott Kutzing, Plur. Societt. Litt. Sodalis. Halis Saxonum in Commissis C.A. Schwetschkii et Fil, 4 pp.
- Kutzing, F.T. (1844) Die Kieselschaligen. Bacillarien oder Diatomeen. Nordhausen, 152 pp. https://doi.org/10.5962/bhl.title.64360
- Lange-Bertalot, H. & Metzeltin, D. (1996) Indicators of oligotrophy - 800 taxa representative of three ecologically distinct lake types, Carbonate buffered - Oligodystrophic - Weakly buffered soft water. Iconographia Diatomologica 2: 1-390.
- Lange-Bertalot, H. & Moser, G. (1994) Brachysira Monographie der Gattung. Bibliotheca Diatomologica 29: 1-212.
- Lange-Bertalot, H. (1999) Neue Kombinationen von Taxa aus Achnanthes Bory (sensu lato). Iconographia Diatomologica 6: 270-283.
- Larsen, J. (2000) Recent changes in diatom-inferred pH, heavy metals, and spheroidal carbonaceous particles in lake sediments near an oil refinery at Mongstad, Western Norway. Journal of Paleolimnology 23: 343-363. https://doi.org/10.1023/A:1008196306748
- Leira, M., Cole, E.E. & Mitchell, F.J.G. (2007) Peat erosion and atmospheric deposition impacts on an oligotrophic lake in eastern Ireland. Journal of Paleolimnology 38: 49-71. https://doi.org/10.1007/s10933-006-9060-3
- Metzeltin, D. & Lange-Bertalot, H. (1998) Tropical diatoms of South America I: About 700 predominantly rarely known or new taxa representative of the neotropical flora. Iconographia Diatomologica 5: 1-695.
- Metzeltin, D. & Lange-Bertalot, H. (2002) Diatoms from the "Island Continent" Madagascar. Iconographia Diatomologica 11: 1-286.
- Metzeltin, D. & Lange-Bertalot, H. (2007) Tropical diatoms of South America II. Special remarks on biogeography disjunction. Iconographia Diatomologica 18: 1-877.
- Morales, E.A., Wetzel, C.E., Van de Vijver, B., Novais, M.H., Hoffmann, L. & Ector, L. (2012) Examination of type material of araphid diatoms (Bacillariophyta) nomenclaturally associated to Fragilaria, Staurosira or Pseudostaurosira: A long history of species concept drift. In: Twenty-second International Diatom Symposium, Aula Academica, Ghent, 26-31 August 2012. Abstracts. Special Publication 58. VLIZ, 83 pp.
- Moser, G., Lange-Bertalot, H. & Metzeltin, D. (1998) Insel der Endemiten Geobotanisches Phanomen Neukaledonien (Island of endemics New Caledonia - a geobotanical phenomenon). Bibliotheca Diatomologica 38: 1-464.
- Moser, G., Steindorf, A. & Lange-Bertalot, H. (1995) Neukaledonien Diatomeenflora einer Tropeninsel. Revision der collection Maillard und Untersuchung neuen materials. Bibliotheca Diatomologica 32: 1-340.
- Novais, M.H., Juttner, I., Van de Vijver, B., Morais, M.M., Hoffmann, L. & Ector, L. (2015) Morphological variability within the Achnanthidium minutissimum species complex (Bacillariophyta): comparison between the type material of Achnanthes minutissima and related taxa, and new freshwater Achnanthidium species from Portugal. Phytotaxa 224 (2): 101-139. https://doi.org/10.11646/phytotaxa.224.2.1
- O'Meara, E. (1876) Report of the Irish Diatomaceae. Proceedings of the Royal Irish Academy 2: 235-425.
- Potapova, M.G., Hamilton, P.B., Kopyrina, L.I. & Sosina, N.K. (2014) New and rare diatom (Bacillariophyta) species from a mountain lake in Eastern Siberia. Phytotaxa 156 (3): 100-116. https://doi.org/10.11646/phytotaxa.156.3.2
- R Core Team (2014) R: A language and environment for statistical computing. R Foundation for Statistical Computing. Vienna, Austria. Available from: http://www.R-project.org/ (accessed 1 October 2017)
- Rasband, W.S. (1997-2016) ImageJ, U. S. National Institutes of Health, Bethesda, Maryland, USA. Available from: http://imagej.nih. gov/ij/ (accessed 1 October 2017)
- Ross, R., Cox, E.J., Karayeva, N.I., Mann, D.G., Paddock, T.B.B., Simonsen, R. & Sims, P.A. (1979) An amended terminology for the siliceous components of the diatom cell. Nova Hedwigia Beiheft 64: 513-533.
- Round, F.E. & Mann, D.G. (1981) The diatom genus Brachysira I. Typification and separation from Anomoeoneis. Archiv fur Protistenkunde 124: 221-231. https://doi.org/10.1016/S0003-9365(81)80014-0
- Round, F.E., Crawford, R.M. & Mann, D.G. (1990) The diatoms: Biology and Morphology of the genera. Cambridge, Cambridge University Press, 747 pp.
- Round, F.E. (2004) pH scaling and diatom distribution. Diatom 20: 9-12.
- Rumrich, U., Lange-Bertalot, H. & Rumrich, M. (2000) Diatoms of the Andes. From Venezuela to Patagonia/Tierra del Fuego and two additional contributions. Iconographia Diatomologica 9: 1-649.
- Schaumburg, J., Schranz, C., Hofmann, G., Stelzer, D., Schneider, S. & Schmedtje, U. (2004) Macrophytes and phytobenthos as indicators of ecological status in German lakes - a contribution to the implementation of the water framework directive. Limnologica - Ecology and Management of Inland Waters 34: 302-314. https://doi.org/10.1016/S0075-9511(04)80003-3
- Schoeman, F.R. & Archibald, R.E.M. (1988) Taxonomic notes on the diatoms (Bacillariophyceae) of the Gross Barmen thermal springs in South West Africa/Namibia. Journal of South African Botany 54 (3): 221-256. https://doi.org/10.1016/S0254-6299(16)31322-9
- Shayler, H.A. & Siver, P.A. (2004a) Biodiversity of the genus Brachysira in the Ocala National Forest, Florida, U.S.A. In: Poulin, M. (Ed.) Proceedings of the seventeenth international diatom symposium. Biopress Limited, Bristol, pp. 309-333.
- Shayler, H.A. & Siver, P.A. (2004b) Description of a new species of the diatom genus Brachysira (Bacillariophyta), Brachysira gravida sp. nov. from the Ocala National Forest, Florida, U.S.A. Nova Hedwigia 78: 399-409. https://doi.org/10.1127/0029-5035/2004/0078-0399
- Siver, P.A., Ahrens, T.D., Hamilton, P.B., Stachura-Suchoples, K. & Kociolek, J.P. (2004) The ecology of diatoms in ponds and lakes on the Cape Cod peninsula, Massachusetts, U.S.A., with special reference to pH. In: Proceedings of the seventeenth international diatom symposium (Ed. by M. Poulin). Biopress Limited, Bristol, pp. 337-357.
- Simpson, G.L. & Oksanen, J. (2016) analogue: Analogue matching and Modern Analogue Technique transfer function models. R package version 0.17-0. Available from: http://cran.r-project.org/package=analogue (accessed 1 October 2017)
- Sims, P. (2007) The Diatoms (Bacillariophyta) In: Guiry, M.D., John, M.D., Rindi, F., McCarthy, K. (Eds.) (2007) The Freshwater and Subaerial Algae of Clare Island. New Survey of Clare Island 6. The Royal Irish Academy, Dublin, 254 pp.
- Tolotti, M. (2001) Phytoplankton and littoral epilithic diatoms in high mountain lakes of the Adamello-Brenta Regional Park (Trentino, Italy) and their relationship to trophic status and acidification risk. Journal of Limnology 60: 171-188. https://doi.org/10.4081/jlimnol.2001.1.171
- Vanormelingen, P., Evans, K.M., Chepurnov, V.A., Vyverman, W. & Mann, D.G. (2013). Molecular species discovery in the diatom Sellaphora and its congruence with mating trials. Fottea, Olomouc 13 (2): 133-148. https://doi.org/10.5507/fot.2013.012
- Van Dam, H., Mertens, A. & Sinkeldam, J. (1994) A coded checklist and ecological indicator values of freshwater diatoms from The Netherlands. Netherland Journal of Aquatic Ecology 28 (1): 117-133. https://doi.org/10.1007/BF02334251
- Van de Vijver, B. & Kopalova, K. (2014) Four Achnanthidium species (Bacillariophyta) formerly identified as Achnanthidium minutissimum from the Antarctic Region. European Journal of Taxonomy 79: 1-19. https://doi.org/10.5852/ejt.2014.79
- Van de Vijver, B. (2014) Analysis of the type material of Navicula brachysira Brebisson with the description of Brachysira sandrae, a new raphid diatom (Bacillariophyceae) from Iles Kerguelen (TAAF, sub-Antarctica, southern Indian Ocean). Phytotaxa 184 (3): 139-147. https://doi.org/10.11646/phytotaxa.184.3.3
- Van de Vijver, B., Verweij, G.L., van der Wal, J. & Mertens, A. (2012) Encyonopsis neerlandica, a new freshwater diatom species (Bacillariophyta) from moorland pools in The Netherlands. Phytotaxa 66: 43-48. https://doi.org/10.11646/phytotaxa.66.1.7
- Vidakovic, D., Krizmanic, J., Sovran, S. & Cvijan, M. (2016) Diatoms from a peat bog on the Pester plateau (southwestern Serbia): New records for diatom flora of Serbia. Archives of Biological Sciences 68 (1): 107-116. https://doi.org/10.2298/ABS150512132V
- Vouilloud,A.A., Sala, S.E., Nunez-Avellaneda, M., Montoya-Moreno,Y. & Duque, S.R. (2014) Brachysira (Naviculales, Bacillariophyceae) in lowland waters from Colombia. Diatom Research 29 (2): 147-163. https://doi.org/10.1080/0269249X.2013.866909
- Wang, Y.F. & Wu, J.T. (2005) Diatoms of the Mysterious Lake, Taiwan. Taiwania 50: 40-56.
- Werum, M. & Lange-Bertalot, H. (2004) Diatoms in springs from Central Europe and elsewhere under the influence of hydrologeology and anthropogenic impacts. Iconographia Diatomologica 13: 3-417.
- Wolfe, A.P. & Kling, H.J. (2001) A consideration of some North American soft-water Brachysira taxa and description of B. arctoborealis sp. nov. In: Jahn, R., Kociolek, J.P., Witkowski, A. & Compere, P. (Eds.) Lange-Bertalot-Festschrift: Studies on Diatoms. Dedicated to Prof. Dr. Dr. h.c. Horst Lange-Bertalot on the occasion of his 65th Birthday. A.R.G. Gantner Verlag. K.G, pp. 243-264.
- Wolnik, L. & Carter, R.T. (2014) Diatoms Ireland. Available from: https://www.diatomsireland.com/irish-freshwater-species-list (accessed 1 December 2016)