Published March 17, 2017 | Version v1
Journal article Restricted

Detecting the phylogenetic position of Bovista acuminata (Agaricales, Basidiomycota) by an ITS-LSU combined analysis: the new genus Bryoperdon and revisitation of Lycoperdon subgen. Apioperdon

  • 1. Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli 25, I-10125 Torino, Italy & Institute for Sustainable Plant Protection (IPSP)-CNR, Viale P.A. Mattioli 25, I-10125 Torino, Italy
  • 2. Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli 25, I-10125 Torino, Italy

Description

Vizzini, Alfredo, Ercole, Enrico (2017): Detecting the phylogenetic position of Bovista acuminata (Agaricales, Basidiomycota) by an ITS-LSU combined analysis: the new genus Bryoperdon and revisitation of Lycoperdon subgen. Apioperdon. Phytotaxa 299 (1): 77-86, DOI: 10.11646/phytotaxa.299.1.5, URL: http://dx.doi.org/10.11646/phytotaxa.299.1.5

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:4B0CB006FFA95C557A17FFC9D473EC08
URL
http://publication.plazi.org/id/4B0CB006FFA95C557A17FFC9D473EC08

References

  • Albee-Scott, S.R. (2007) Does secotioid inertia drive the evolution of false-truffles? Mycological Research 111: 1030-1039. https://doi.org/10.1016/j.mycres.2007.08.008
  • Bates, S.T. (2004) Arizona members of the Geastraceae and Lycoperdaceae (Basidiomycota, Fungi). MSc thesis, Arizona State University, Tempe, pp. 286.
  • Bates, S.T., Roberson, R.W. & Desjardin, D.E. (2009) Arizona gasteroid fungi I: Lycoperdaceae (Agaricales, Basidiomycota). Fungal Diversity 37: 153-207.
  • Bowerman, C.A. (1961) Lycoperdon in eastern Canada with special reference to the Ottawa district. Canadian Journal of Botany 39: 353-383. https://doi.org/10.1139/b61-029
  • Bruns, T.D., Fogel, R., White, T.J. & Palmer, J.D. (1989) Accelerated evolution of a false-truffle from a mushroom ancestor. Nature 339: 140-142. https://doi.org/10.1038/339140a0
  • Calonge, F.D. (1996) Some aspects of the ecology and taxonomy of the Iberian peninsula (Spain and Portugal) Gasteromycetes. Micologia e Vegetazione Mediterranea 11 (2): 115-128.
  • Calonge, F.D. (1998) Flora Micologica Iberica. Vol. 3. Gasteromycetes, I. Lycoperdales, Nidulariales, Phallales, Sclerodermatales, Tulostomatales. J. Cramer & Real Jardin Botanico, CSIC, Madrid, Stuttgart, 271 pp.
  • Calonge, F.D., Carrascosa, G. & Estanyol, S. (1993) Bovista ochrotricha Kreisel, nueva cita para Espana Peninsular. Boletin de la Sociedad Micologica de Madrid 18: 189-191.
  • Chevallier, F.F. (1826) Flore Generale des Environs de Paris 1. 674 pp.
  • Coker, W.C. & Couch, J.N. (1928) The Gasteromycetes of the Eastern United-States and Canada. University of North Carolina Press, Chapel Hill, 201 pp., 123 pl.
  • Cortini Pedrotti, C. (2005) Flora dei muschi d'Italia. Vol. 2: Bryopsida. Antonio Delfino editore, Roma, 432 pp.
  • Czernajew, B.M. (1845) Nouveaux cryptogames de l'Ukraine et quelques mots sur la flore de ce pays. Bulletin de la Societe Imperiale des Naturalistes de Moscou 18(2): 132-157.
  • Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) "jModelTest 2: more models, new heuristics and parallel computing". Nature Methods 9 (8): 772. https://doi.org/10.1038/nmeth.2109
  • Demoulin, V. (1971) Le Genre Lycoperdon en Europe et en Amerique du Nord. Etude Taxonomique et Phytogeographique. PhD Thesis. Universite de Liege, 284 pp.
  • Demoulin, V. (1972) Especes nouvelles ou meconnues du genre Lycoperdon (Gasteromycetes). Lejeunia, Nouvelle Serie 62: 1-28.
  • Demoulin, V. (1983) Cle de determination des especes du genre Lycoperdon presentes dans le sud de l'Europe. Revista de Biologia 12: 65-70.
  • Drummond, A.J., Ashton, B., Cheung, M., Heled, J., Kearse, M., Moir, R., Stones-Havas, S., Thierer, T. & Wilson, A. (2010) Geneious v5.3. Available from: http://www.geneious.com/ (accessed 1 March 2017)
  • Esqueda-Valle, M., Perez-Silva, E., San Martin, F. & Santos, R. (1999) Macromicetos de Selva Baja Caducifolia I. Alamos, Sonora, Mexico. Revista Mexicana de Micologia 15: 73-78.
  • Frey, W., Frahm, J.-P., Fischer, E. & Lobin, W. (2006) The Liverworts, Mosses and Ferns of Europe. Harley Books, Colchester, England, 512 pp.
  • Fries, E.M. (1849) Summa vegetabilium Scandinaviae 2: 259-572.
  • Fries, E.M. (1851) Novae symbolae mycologicae, in peregrinis terris a botanicis danicis collectae. Nova Acta Regiae Societatis Scientiarum Upsaliensis 1: 17-136.
  • Gardes, M. & Bruns, T.D. (1993) ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113-118. https://doi.org/10.1111/j.1365-294X.1993.tb00005.x
  • Gube, M. (2009) Ontogeny and phylogeny of gasteroid members of Agaricaceae (Basidiomycetes). Thesis Friedrich-Schiller-Universitat, Jena.Available from: http://deposit.d-nb.de/cgi-bin/dokserv?Idn0999990691 & dok_var0d1 & dok_ext0pdf & filename0999990691. pdf (accessed 1 March 2017)
  • Gube, M. & Dorfelt, H. (2012) Gasteromycetation in Agaricaceae s.l. (Basidiomycota): Morphological and ecological implementations. Feddes Repertorium 122 (5-6): 367-390. https://doi.org/10.1002/fedr.201000025
  • Heim, R. (1951) Notes sur la flore mycologique des Terres du Pacifique Sud. III. Sur les Secotium de Nouvelle-Zelande et la phylogenie de ce genre. Revue de Mycologie 16: 129-153.
  • Jeppson, M. (2006) The genus Lycoperdon in Greenland and Svalbard. In: Boertmann, D. & Knudsen, H. (Eds.) Arctic and alpine mycology 6. Meddelelserom Gronland. BioScience 56: 106-127.
  • Jeppson, M., Larsson, E. & Martin, M.P. (2012) Lycoperdon rupicola and L. subumbrinum: two new puffballs from Europe. Mycological Progress 11 (4): 887-897. https://doi.org/10.1007/s11557-011-0804-8
  • Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30: 3059-3066. https://doi.org/10.1093/nar/gkf436
  • Kim, C.S., Jo, J.W., Kwag, Y.-M., Sung, G.-H., Han, J.-G., Shrestha, B., Oh, S.-O., Kim, S.-Y., Shin, C.-H. & Han, S.-K. (2016) Two new Lycoperdon species collected from Korea: L. albiperidium and L. subperlatum spp. nov. Phytotaxa 260 (2): 101-115. https://doi.org/10.11646/phytotaxa.260.2.1
  • Kreisel, H. (1962) Die Lycoperdaceae der DDR. Reprint 1973. Bibliotheca Mycologica Bd 36. J. Cramer, Lehre, 201 pp.
  • Kreisel, H. (1964) Vorlaufige Ubersicht der Gattung Bovista. Feddes Repertorium 69: 196-211.
  • Kreisel, H. (1967) Taxonomisch-Pflanzengeographische Monographie der Gattung Bovista. Beihefte zur Nova Hedwigia 25. J. Cramer, Lehre, 244 pp.
  • Kreisel, H. (1969) Grundzuge eines naturlichen Systems der Pilze. G. Fischer, Jena, 245 pp.
  • Kreisel, H. (1989) Studies in the Calvatia complex (Basidiomycetes). Nova Hedwigia 48: 281-296.
  • Kreisel, H. (2001) Checklist of the gasteral and secotioid Basidiomycetes of Europe,Africa and the Middle East. Osterreichische Zeitschrift fur Pilzkunde 10: 213-313.
  • Kreisel, H. & Karasch, P. (2005) Uber Bovista acuminata und Morganella subincarnata-zwei bemerkenswerte Gasteromycetenfunde aus dem Alpenraum. Mycologia Bavarica 8: 9-15.
  • Kruger, D. & Kreisel, H. (2003) Proposing Morganella subgen. Apioperdon subgen nov. for the puffball Lycoperdon pyriforme. Mycotaxon 86: 169-177.
  • Kruger, D., Binder, M., Fischer, M. & Kreisel, H. (2001) The Lycoperdales: a molecular approach to the systematics of some gasteroid mushrooms. Mycologia 93: 947-957. https://doi.org/10.2307/3761759
  • Kruger, D. & Gargas, A. (2008) Secondary structure of ITS2 rRNA provides taxonomic characters for systematic studies-a case in Lycoperdaceae (Basidiomycota). Mycological Research 112: 316-330. https://doi.org/10.1016/j.mycres.2007.10.019
  • Larsson, E. & Jeppson, M. (2008) Phylogenetic relationships among species and genera of Lycoperdaceae based on ITS and LSU sequence data from north European taxa. Mycological Research 112: 4-22. https://doi.org/10.1016/j.mycres.2007.10.018
  • Lloyd, C.G. (1905) Mycological Notes 20. The Lycoperdons of the United States. Mycological Writings 2 (20): 221-244.
  • Matheny, P.B., Curtis, J.M., Hofstetter, V., Aime, M.C., Moncalvo, J.M., Ge, Z.W., Yang, Z.L., Slot, J.C., Ammirati, J.F., Baroni, T.J., Bougher, N.L., Hughes, K.W., Lodge, D.J., Kerrigan, R.W., Seidl, M.T., Aanen, D.K., DeNitis, M., Daniele, G.M., Desjardin, D.E., Kropp, B.R., Norvell, L.L., Parker, A., Vellinga, E.C., Vilgalys, R. & Hibbett, D.S. (2006) Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98: 982-995. https://doi.org/10.3852/mycologia.98.6.982
  • Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), 14 November 2010, New Orleans, LA. pp. 1-8. http://dx.doi.org/10.1109/GCE.2010.5676129
  • Moncalvo, J.M., Vilgalys, R., Redhead, S.A., Johnson, J.E., James, T.Y., Aime, M.C., Hofstetter, V., Verduin, S.J.W., Larsson, E., Baroni, T.J., Thorn, R.G., Jacobsson, S., Clemencon, H. & Miller, O.K. (2002) One hundred and seventeen clades of euagarics. Molecular Phylogenetics and Evolution 23: 357-400. https://doi.org/10.1016/S1055-7903(02)00027-1
  • Morgan, A.P. (1892) North American Fungi. Fifth Paper. Journal of the Cincinnati Society of Natural History 14 (3-4): 141-148.
  • Oberwinkler, F. (2012) Evolutionary trends in Basidiomycota. Stapfia 96: 45-104.
  • Pegler, D.N., Laessoe, T. & Spooner, B.B. (1995) British puffballs, earthstars ad stinkhorns. An account of the British gasteroid fungi. Whitstable, Royal Botanic Gardens, Kew, 255 pp.
  • Perez-De-Gregorio, M.A (2014) Bovista acuminata. Bolets de Catalunya 33: 1608.
  • Persoon, C.H. (1794) Dispositio methodica fungorum. Neues Magazin fur die Botanik 1: 81-128.
  • Persoon, C.H. (1796) Observationes mycologicae, Pars I. P.P. Wolf, Lipsiae, 116 pp.
  • Persoon, C.H. (1801) Synopsis methodica fungorum. H. Dieterich, Gottingae, 706 pp.
  • Poumarat, S. (2003) Cle des Gasteromycetes epiges d'Europe. Phallales: Geastraceae, Hysterangiaceae, Phallaceae; Agaricales: Lycoperdaceae, Mycenastraceae, Nidulariaceae, Phelloriniaceae, Tulostomataceae; Boletales: Sclerodermataceae (genres secotioides exclus). Monographies Mycologiques de la FAMM, n° 2, 2eme edit. revue et augmentee, Edit. FAMM, Nice, 100 pp.
  • Poumarat, S. (2007) Bovista acuminata (Bosc) Kreisel et Vascellum intermedium A.H. Smith, especes nouvelles pour la France. Bulletin Semestriel de la Federation des Associations Mycologiques Mediterraneennes 32 (2): 53-64.
  • Rebriev, Y.A. (2015) Diversity of the gasteroid genus Bovista in Russia The study, preservation and restoration of the natural landscape: collected articles of Vth international scientific-practical conference, Volgograd, 12-16 October 2015. pp. 100-104 [in Russian]
  • Reijnders,A.F.M. (2000)A morphogenetic analysis of the basic characters of the gasteromycetes and their relation to other hymenomycetes. Mycological Research 104 (8): 900-910. https://doi.org/10.1017/S0953756299002233
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539-542. https://doi.org/10.1093/sysbio/sys029
  • Rostkovius, F.W.T. (1839) Deutschlands Flora, Abt. III. Die Pilze Deutschlands 5-18: 1-36.
  • Sarasini, M. (2005) Gasteromiceti epigei. Associazione Micologica Bresadola, Trento, 406 pp.
  • Savile, D.B.O. (1955) A phylogeny of the Basidiomycetes. Canadian Journal of Botany 33: 60-104. https://doi.org/10.1139/b55-006
  • Savile, D.B.O. (1968) Possible interrelationships between fungal groups. In: Ainsworth, G.C. & Sussman, A.S. (Eds.) The Fungi. An advanced treatise. Academic Press, New York, pp. 649-675. https://doi.org/10.1016/b978-1-4832-2744-3.50032-8
  • Singer, R. (1986) The Agaricales in modern taxonomy. 4th edn. Koeltz Scientific Books, Koenigstein, 981 pp.
  • Smarda, F. (1958) Lycoperdaceae. In: Pilat, A. (Ed.) Gasteromycetes. Flora CSR. Ser. B, 1, Praha, pp. 257-377.
  • Swartz, D. (1936) The development of Lycoperdon acuminatum. Mycologia 28 (3): 278-283. https://doi.org/10.2307/3754277
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA 6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30 (12): 2725-2729. https://doi.org/10.1093/molbev/mst197
  • Thiers, B. (2016) [continuously updated] Index Herbariorum: A global directory of public herbaria and associated staff. New York Botanical Garden's Virtual Herbarium. Available from: http://sweetgum.nybg.org/science/ih/ (accessed 7 December 2016)
  • Thiers, H.D. (1984) The secotioid syndrome. Mycologia 92: 1-8. https://doi.org/10.2307/3792830
  • Vellinga, E.C. (2004) Genera in the family Agaricaceae: evidence from nrITS and nrLSU sequences. Mycological Research 108: 354- 377. https://doi.org/10.1017/S0953756204009700
  • Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  • White, T.J., Bruns, T., Lee, S. & Taylor, J.W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR protocols: a guide to methods and applications. Academic Press Inc., New York, pp. 315-322. https://doi.org/10.1016/b978-0-12-372180-8.50042-1
  • Wilson,A.W., Binder, M. & Hibbett, D.S. (2011) Effects of gasteroid fruiting body morphology on diversification rates in three independent clades of fungi estimated using binary state speciation and extinction analysis. Evolution 65 (5): 1305-1322. https://doi.org/10.1111/j.1558-5646.2010.01214.x
  • Zeller, S.M. (1948) Notes on certain Gasteromycetes, including two new orders. Mycologia 40 (6): 639-668. https://doi.org/10.2307/3755316