obophenotype/uberon: Release v2026-06-23
Authors/Creators
- Chris Mungall1
- Damien Goutte-Gattat2
- Shawn Tan
- Nico Matentzoglu3
- Aleix Puig4
- Meghan Balk5
- David Osumi-Sutherland6
- PaulaDuekRoggli
- paolaroncaglia
- Nicole Vasilevsky7
- Jim Balhoff8
- Anita Caron9
- Bill Duncan10
- Arwa Ibrahim
- Ray Stefancsik
- Jasmine Belfiore
- Vassilis Virvilis11
- CEastwood
- Maria Keays
- Martin Larralde12
- Charles Tapley Hoyt13
- Harshad
- Wasila Dahdul
- Dragon-AI Agent14
- Tom Gillespie
- helenamachado
- shawntanzknn
- Bonita Lam15
- Alida Avola
- 1. Lawrence Berkeley National Laboratory
- 2. German BioImaging e.V.
- 3. semanticly.ai
- 4. EBI-EMBL
- 5. Natural History Museum, University of Oslo
- 6. www.virtualflybrain.org
- 7. Critical Path Institute
- 8. @RENCI
- 9. ARC Semantics
- 10. University of Florida
- 11. Biovista Inc
- 12. LUMC (ex EMBL) @zellerlab
- 13. RWTH Aachen University
- 14. Monarch Initiative
- 15. Agilent Technologies
Description
What's Changed
<details> <summary>Nodes added to subset: 418</summary>
| Term | Subset | ----|----| | spinous process of second cervical vertebra (UBERON:1200207) | human_reference_atlas | | supraspinous fossa of scapula (UBERON:1200261) | human_reference_atlas | | vertebral arch of third thoracic vertebra (UBERON:1200309) | human_reference_atlas | | vertebral arch of eighth thoracic vertebra (UBERON:1200288) | human_reference_atlas | | intercondylar notch of femur (UBERON:1200113) | human_reference_atlas | | superior articular facet of sixth thoracic vertebra (UBERON:1200244) | human_reference_atlas | | stylomastoid foramen of petrous part of temporal bone (UBERON:1200222) | human_reference_atlas | | petrotympanic fissure of squamous part of temporal bone (UBERON:1200171) | human_reference_atlas | | sacral promontory of sacrum (UBERON:1200193) | human_reference_atlas | | foramen magnum (UBERON:0003687) | human_reference_atlas | | facial muscle (UBERON:0001577) | human_reference_atlas | | temporal fossa (UBERON:0013463) | human_reference_atlas | | muscle layer of infundibulum of uterine tube (UBERON:0007182) | human_reference_atlas | | rectus capitis anterior (UBERON:0008453) | human_reference_atlas | | head of second middle phalanx of hand (UBERON:1200071) | human_reference_atlas | | hypothenar muscle (UBERON:0014377) | human_reference_atlas | | inferior articular facet of first cervical vertebra (UBERON:1200088) | human_reference_atlas | | pterygoid fovea of mandible (UBERON:1200180) | human_reference_atlas | | cubital lymph node (UBERON:0038870) | human_reference_atlas | | obturator foramen (UBERON:0006803) | human_reference_atlas | | mammillary process of first lumbar vertebra (UBERON:1200130) | human_reference_atlas | | superior articular facet of first thoracic vertebra (UBERON:1200233) | human_reference_atlas | | auricular surface of ilium of os coxa (UBERON:1200017) | human_reference_atlas | | septal nuclear complex (UBERON:0002663) | human_reference_atlas | | inferior articular facet of seventh cervical vertebra (UBERON:1200095) | human_reference_atlas | | fibular notch of tibia (UBERON:1200043) | human_reference_atlas | | sella turcica (UBERON:0003689) | human_reference_atlas | | lunate surface of os coxa (UBERON:1200128) | human_reference_atlas | | superior articular facet of first lumbar vertebra (UBERON:1200232) | human_reference_atlas | | anterior gluteal line of ilium of os coxa (UBERON:1200010) | human_reference_atlas | | soleal line of tibia (UBERON:1200205) | human_reference_atlas | | lesser wings of sphenoid bone (UBERON:1200126) | human_reference_atlas | | transverse costal facet of third thoracic vertebra (UBERON:1200275) | human_reference_atlas | | head of ulna of ulna (UBERON:1200073) | human_reference_atlas | | intra-ocular muscle (UBERON:0011222) | human_reference_atlas | | olecranon fossa (UBERON:0012130) | human_reference_atlas | | facet of first rib (UBERON:1200039) | human_reference_atlas | | supercilary arch of frontal bone (UBERON:1200225) | human_reference_atlas | | middle nasal concha (UBERON:0005921) | human_reference_atlas | | palmar interosseous muscle of manus (UBERON:0006505) | human_reference_atlas | | lamina of second cervical vertebra (UBERON:1200122) | human_reference_atlas | | diaphragm (UBERON:0001103) | human_reference_atlas | | dentogingival junction (UBERON:8000014) | human_reference_atlas | | posterior gluteal line of ilium of os coxa (UBERON:1200174) | human_reference_atlas | | gustatory gland (UBERON:0013475) | human_reference_atlas | | anterior arch of first cervical vertebra (UBERON:1200008) | human_reference_atlas | | superior articular facet of fifth cervical vertebra (UBERON:1200228) | human_reference_atlas | | anterior inferior iliac spine (UBERON:0013709) | human_reference_atlas | | foramen ovale of sphenoid bone (UBERON:1200045) | human_reference_atlas | | tubercle of calcaneus (UBERON:7500094) | human_reference_atlas | | inferior articular facet of seventh thoracic vertebra (UBERON:1200096) | human_reference_atlas | | sternal end of ninth rib (UBERON:1200214) | human_reference_atlas | | inferior articular facet of fourth thoracic vertebra (UBERON:1200091) | human_reference_atlas | | groove for superior sagittal sinus of frontal bone (UBERON:1200062) | human_reference_atlas | | vertebral arch of second cervical vertebra (UBERON:1200299) | human_reference_atlas | | transverse costal facet of eighth thoracic vertebra (UBERON:1200265) | human_reference_atlas | | inferior articular facet of second thoracic vertebra (UBERON:1200094) | human_reference_atlas | | anterior tubercle of first cervical vertebra (UBERON:1200012) | human_reference_atlas | | vertebra prominens of seventh cervical vertebra (UBERON:1200287) | human_reference_atlas | | superior articular facet of seventh thoracic vertebra (UBERON:1200242) | human_reference_atlas | | trochlear notch (UBERON:0008449) | human_reference_atlas | | inferior articular facet of fourth cervical vertebra (UBERON:1200090) | human_reference_atlas | | vertebral arch of third cervical vertebra (UBERON:1200307) | human_reference_atlas | | superior orbital fissure (UBERON:0005480) | human_reference_atlas | | body of sphenoid bone (UBERON:1200024) | human_reference_atlas | | groove for nasopalatine nerve of vomer (UBERON:1200057) | human_reference_atlas | | non-articular facet of tubercle of third rib (UBERON:1200158) | human_reference_atlas | | superior articular facet of seventh cervical vertebra (UBERON:1200241) | human_reference_atlas | | sternal end of fourth rib (UBERON:1200213) | human_reference_atlas | | crista galla of ethmoid bone (UBERON:1200031) | human_reference_atlas | | ethmoidal bulla of ethmoid bone (UBERON:1200035) | human_reference_atlas | | infraspinous fossa of scapula (UBERON:1200112) | human_reference_atlas | | hiatus and groove of petrous part of temporal bone for greater petrosal nerve (UBERON:1200074) | human_reference_atlas | | olecranon (UBERON:0006810) | human_reference_atlas | | internal occipital protuberance of squamous part of occipital bone (UBERON:1200116) | human_reference_atlas | | inferior nuchal line of squamous part of occipital bone (UBERON:1200108) | human_reference_atlas | | longitudinal muscle layer of muscular coat (UBERON:0012369) | human_reference_atlas | | calcaneal sulcus of calcaneus (UBERON:1200025) | human_reference_atlas | | sublingual gland ducto-acinar unit (UBERON:8000012) | human_reference_atlas | | inferior vertebral notch of first cervical vertebra (UBERON:1200109) | human_reference_atlas | | aryepiglotticus muscle (UBERON:0011025) | human_reference_atlas | | pubic crest of pubis of os coxa (UBERON:1200183) | human_reference_atlas | | inferior articular facet of first thoracic vertebra (UBERON:1200089) | human_reference_atlas | | tympanic caniliculus of petrous part of temporal bone (UBERON:1200286) | human_reference_atlas | | groove for posterior deep temporal artery of squamous part of temporal bone (UBERON:1200058) | human_reference_atlas | | mandibular angle of mandible (UBERON:1200134) | human_reference_atlas | | vertebral arch of first thoracic vertebra (UBERON:1200294) | human_reference_atlas | | rectus capitis posterior minor (UBERON:0008455) | human_reference_atlas | | coronoid fossa of humerus (UBERON:1200027) | human_reference_atlas | | iliac tuberosity of ilium of os coxa (UBERON:1200081) | human_reference_atlas | | non-articular facet of tubercle of fifth rib (UBERON:1200150) | human_reference_atlas | | costal groove of first rib (UBERON:1200028) | human_reference_atlas | | median sacral crest of sacrum (UBERON:1200143) | human_reference_atlas | | lateral sacral crest of sacrum (UBERON:1200125) | human_reference_atlas | | hyoid bone lesser horn (UBERON:0003998) | human_reference_atlas | | groove for vertebral artery of first cervical vertebra (UBERON:1200066) | human_reference_atlas | | transverse costal facet of fourth thoracic vertebra (UBERON:1200269) | human_reference_atlas | | body of calcaneus (UBERON:1200022) | human_reference_atlas | | base of first proximal phalanx of hand (UBERON:1200021) | human_reference_atlas | | sternal end of eighth rib (UBERON:1200209) | human_reference_atlas | | head of second middle phalanx of foot (UBERON:1200070) | human_reference_atlas | | frontal sinus (UBERON:0001760) | human_reference_atlas | | arcuate line of ilium of os coxa (UBERON:1200014) | human_reference_atlas | | inferior costal facet of tenth thoracic vertebra (UBERON:1200106) | human_reference_atlas | | ectocervical epithelium (UBERON:0012251) | human_reference_atlas | | mylohyoid line of mandible (UBERON:1200146) | human_reference_atlas | | radial tuberosity of radius (UBERON:1200188) | human_reference_atlas | | superior articular facet of third cervical vertebra (UBERON:1200246) | human_reference_atlas | | inferior articular facet of tenth thoracic vertebra (UBERON:1200099) | human_reference_atlas | | cervical squamo-columnar junction (UBERON:0012253) | human_reference_atlas | | pubic tubercle of pubis of os coxa (UBERON:1200185) | human_reference_atlas | | pubic symphysis (UBERON:0003699) | human_reference_atlas | | inferior pubic ramus (UBERON:0014439) | human_reference_atlas | | sacral cornu of sacrum (UBERON:1200191) | human_reference_atlas | | carotid canal (UBERON:0006668) | human_reference_atlas | | sternal region bone (UBERON:1200221) | human_reference_atlas | | posterior internodal tract (UBERON:0015127) | human_reference_atlas | | hyoid region bone (UBERON:1200076) | human_reference_atlas | | parotid gland ducto-acinar unit (UBERON:8000011) | human_reference_atlas | | gluteal surface of ilium of os coxa (UBERON:1200050) | human_reference_atlas | | superior vertebral notch of first cervical vertebra (UBERON:1200255) | human_reference_atlas | | superior articular facet of eleventh thoracic vertebra (UBERON:1200227) | human_reference_atlas | | dorsum sellae of sphenoid bone (UBERON:1200033) | human_reference_atlas | | thyropharyngeus muscle (UBERON:0010936) | human_reference_atlas | | inferior mental spine of mandible (UBERON:1200107) | human_reference_atlas | | mandibular foramen of mandible (UBERON:1200135) | human_reference_atlas | | inferior articular facet of sixth cervical vertebra (UBERON:1200097) | human_reference_atlas | | granula foveaolae of parietal bone (UBERON:1200052) | human_reference_atlas | | deep cervical lymph node (UBERON:0004722) | human_reference_atlas | | shaft of radius of radius (UBERON:1200203) | human_reference_atlas | | posterior arch of first cervical vertebra (UBERON:1200172) | human_reference_atlas | | ischiopubic ramus (UBERON:0014440) | human_reference_atlas | | transverse ridges of sternum (UBERON:1200278) | human_reference_atlas | | lamina of first cervical vertebra (UBERON:1200121) | human_reference_atlas | | inferior articular facet of twelfth thoracic vertebra (UBERON:1200102) | human_reference_atlas | | non-articular facet of tubercle of eighth rib (UBERON:1200149) | human_reference_atlas | | left crus of diaphragm (UBERON:0014767) | human_reference_atlas | | supraorbital notch or foramen of frontal bone (UBERON:1200260) | human_reference_atlas | | external occipital protuberance (UBERON:0013469) | human_reference_atlas | | head of second distal phalanx of foot (UBERON:1200068) | human_reference_atlas | | transverse costal facet of sixth thoracic vertebra (UBERON:1200273) | human_reference_atlas | | abdominal internal oblique muscle (UBERON:0005454) | human_reference_atlas | | tibialis posterior (UBERON:0001667) | human_reference_atlas | | superior nasal concha (UBERON:0005920) | human_reference_atlas | | glenoid fossa (UBERON:0006657) | human_reference_atlas | | olfactory foramina of ethmoid bone (UBERON:1200164) | human_reference_atlas | | non-articular facet of tubercle of sixth rib (UBERON:1200156) | human_reference_atlas | | inferior articular facet of sixth thoracic vertebra (UBERON:1200098) | human_reference_atlas | | scalene tubercle of first rib (UBERON:1200196) | human_reference_atlas | | tuberosity of second distal phalanx of hand (UBERON:1200284) | human_reference_atlas | | transverse process of vertebra (UBERON:0001077) | human_reference_atlas | | superior costal facet of eleventh thoracic vertebra (UBERON:1200252) | human_reference_atlas | | vertebral arch of tenth thoracic vertebra (UBERON:1200306) | human_reference_atlas | | vertebral arch of fourth cervical vertebra (UBERON:1200295) | human_reference_atlas | | mandibular notch of mandible (UBERON:1200137) | human_reference_atlas | | medial pterygoid plate of sphenoid bone (UBERON:1200142) | human_reference_atlas | | non-articular facet of tubercle of second rib (UBERON:1200154) | human_reference_atlas | | inferior articular process of second cervical vertebra (UBERON:1200104) | human_reference_atlas | | inferior articular facet of fifth cervical vertebra (UBERON:1200086) | human_reference_atlas | | superior nuchal line of squamous part of occipital bone (UBERON:1200254) | human_reference_atlas | | vertebral arch of sixth cervical vertebra (UBERON:1200304) | human_reference_atlas | | greater palatine canal of maxilla (UBERON:1200053) | human_reference_atlas | | ulnar tuberosity (UBERON:4200184) | human_reference_atlas | | zygomatic process of squamous part of temporal bone (UBERON:1200338) | human_reference_atlas | | island of Calleja (UBERON:0001881) | human_reference_atlas | | circular muscle layer of muscular coat (UBERON:0012368) | human_reference_atlas | | foramen lacerum (UBERON:0018651) | human_reference_atlas | | chondroglossus muscle (UBERON:0011535) | human_reference_atlas | | iliac crest (UBERON:0014437) | human_reference_atlas | | splenius capitis (UBERON:0000711) | human_reference_atlas | | vertebral arch of third lumbar vertebra (UBERON:1200308) | human_reference_atlas | | mastoid notch of mastoid part of temporal bone (UBERON:1200139) | human_reference_atlas | | transverse costal facet of second thoracic vertebra (UBERON:1200271) | human_reference_atlas | | hiatus and groove of petrous part of temporal bone for lesser petrosal nerve (UBERON:1200075) | human_reference_atlas | | inferior articular facet of eleventh thoracic vertebra (UBERON:1200085) | human_reference_atlas | | supinator fossa of ulna (UBERON:1200257) | human_reference_atlas | | occipitalis (UBERON:0010947) | human_reference_atlas | | postglenoid tubercle of squamous part of temporal bone (UBERON:1200177) | human_reference_atlas | | sternal end of sixth rib (UBERON:1200217) | human_reference_atlas | | superior articular facet of sixth cervical vertebra (UBERON:1200243) | human_reference_atlas | | heart blood vessel (UBERON:0003498) | human_reference_atlas | | foramen rotundum (UBERON:0005446) | human_reference_atlas | | coccygeal cornu of coccyx (UBERON:1200026) | human_reference_atlas | | obturator groove of pubis of os coxa (UBERON:1200160) | human_reference_atlas | | vertebral arch of first lumbar vertebra (UBERON:1200293) | human_reference_atlas | | vertebral arch of second thoracic vertebra (UBERON:1200301) | human_reference_atlas | | inferior articular facet of third cervical vertebra (UBERON:1200100) | human_reference_atlas | | ethmoidal air cells of ethmoid bone (UBERON:1200034) | human_reference_atlas | | superior articular facet of second thoracic vertebra (UBERON:1200240) | human_reference_atlas | | mandible condylar process (UBERON:0004657) | human_reference_atlas | | vertebral arch of fifth thoracic vertebra (UBERON:1200292) | human_reference_atlas | | sternal end of eleventh rib (UBERON:1200210) | human_reference_atlas | | internal auditory meatus of petrous part of temporal bone (UBERON:1200115) | human_reference_atlas | | non-articular facet of tubercle of first rib (UBERON:1200151) | human_reference_atlas | | transverse costal facet of first thoracic vertebra (UBERON:1200268) | human_reference_atlas | | glabella of frontal bone (UBERON:1200048) | human_reference_atlas | | transverse costal facet of fifth thoracic vertebra (UBERON:1200267) | human_reference_atlas | | base of first proximal phalanx of foot (UBERON:1200020) | human_reference_atlas | | mental foramen (UBERON:0006812) | human_reference_atlas | | articular surface for cuboid bone of calcaneus (UBERON:1200015) | human_reference_atlas | | groove for fibularis longus tendon of cuboid (UBERON:1200055) | human_reference_atlas | | ischial ramus (UBERON:0014441) | human_reference_atlas | | costal notches of sternum (UBERON:1200030) | human_reference_atlas | | groove for subclavian vein of first rib (UBERON:1200061) | human_reference_atlas | | fibular facet of tibia (UBERON:1200042) | human_reference_atlas | | groove for transverse sinus of squamous part of occipital bone (UBERON:1200065) | human_reference_atlas | | longus capitis muscle (UBERON:0001563) | human_reference_atlas | | sternal end of fifth rib (UBERON:1200211) | human_reference_atlas | | levator costarum (UBERON:8410070) | human_reference_atlas | | vertebral arch of fifth lumbar vertebra (UBERON:1200291) | human_reference_atlas | | interosseus border of tibia (UBERON:1200117) | human_reference_atlas | | base of first distal phalanx of hand (UBERON:1200019) | human_reference_atlas | | myocardium (UBERON:0002349) | human_reference_atlas | | sternal end of second rib (UBERON:1200215) | human_reference_atlas | | superior articular facet of fifth thoracic vertebra (UBERON:1200230) | human_reference_atlas | | iliopubic ramus of os coxa (UBERON:1200082) | human_reference_atlas | | heart vasculature (UBERON:0018674) | human_reference_atlas | | sternal end of twelfth rib (UBERON:1200220) | human_reference_atlas | | sternal end of first rib (UBERON:1200212) | human_reference_atlas | | head of radius of radius (UBERON:1200067) | human_reference_atlas | | plantar interosseous muscle of pes (UBERON:0006502) | human_reference_atlas | | transverse costal facet of eleventh thoracic vertebra (UBERON:1200266) | human_reference_atlas | | ceratoglossus (UBERON:0008428) | human_reference_atlas | | coronary capillary (UBERON:0006966) | human_reference_atlas | | posterior ethmoidal foramen (UBERON:0018654) | human_reference_atlas | | vertebral arch of eleventh thoracic vertebra (UBERON:1200289) | human_reference_atlas | | sacral hiatus of sacrum (UBERON:1200192) | human_reference_atlas | | linea terminalis of sacrum (UBERON:1200127) | human_reference_atlas | | sacral spine of sacrum (UBERON:1200194) | human_reference_atlas | | superior articular facet of twelfth thoracic vertebra (UBERON:1200249) | human_reference_atlas | | hyoid bone greater horn (UBERON:0003997) | human_reference_atlas | | trigeminal impression of petrous part of temporal bone (UBERON:1200279) | human_reference_atlas | | vertebral arch of second lumbar vertebra (UBERON:1200300) | human_reference_atlas | | tibial tuberosity (UBERON:7500062) | human_reference_atlas | | scalene muscle (UBERON:0008611) | human_reference_atlas | | pterygoid hamulus of sphenoid bone (UBERON:1200181) | human_reference_atlas | | zygomaticofacial foramen of zygomatic bone (UBERON:1200339) | human_reference_atlas | | posterior inferior iliac spine (UBERON:0013711) | human_reference_atlas | | ischial body of ischium of os coxa (UBERON:1200118) | human_reference_atlas | | pituitary fossa (UBERON:0006667) | human_reference_atlas | | maxillary sinus (UBERON:0001764) | human_reference_atlas | | scaphoid tubercle of scaphoid (UBERON:1200197) | human_reference_atlas | | superior articular facet of fifth lumbar vertebra (UBERON:1200229) | human_reference_atlas | | medial process of tuberosity of calcaneus (UBERON:1200141) | human_reference_atlas | | superior articular facet of first cervical vertebra (UBERON:1200231) | human_reference_atlas | | superior articular facet of ninth thoracic vertebra (UBERON:1200237) | human_reference_atlas | | superior articular process of second cervical vertebra (UBERON:1200251) | human_reference_atlas | | sacral tuberosity of sacrum (UBERON:1200195) | human_reference_atlas | | costal diaphragm (UBERON:0035831) | human_reference_atlas | | sustentaculum tali of calcaneus (UBERON:1200262) | human_reference_atlas | | vertebral arch of twelfth thoracic vertebra (UBERON:1200310) | human_reference_atlas | | lesser sciatic notch (UBERON:0014436) | human_reference_atlas | | vertical muscle of tongue (UBERON:0008584) | human_reference_atlas | | retrosplenial region (UBERON:0013531) | human_reference_atlas | | superior longitudinal muscle of tongue (UBERON:0008582) | human_reference_atlas | | iliac tubercle of ilium of os coxa (UBERON:1200080) | human_reference_atlas | | sternal end of seventh rib (UBERON:1200216) | human_reference_atlas | | pecten pubis of pubis of os coxa (UBERON:1200166) | human_reference_atlas | | greater sciatic notch (UBERON:0014411) | human_reference_atlas | | neck of scapula (UBERON:0018667) | human_reference_atlas | | nail matrix (UBERON:0002283) | human_reference_atlas | | body of sternum (UBERON:0006820) | human_reference_atlas | | mandibular canal (UBERON:0006673) | human_reference_atlas | | inferior articular facet of eighth thoracic vertebra (UBERON:1200084) | human_reference_atlas | | hypoglossal canal (UBERON:0006682) | human_reference_atlas | | radial fossa of humerus (UBERON:1200186) | human_reference_atlas | | uvular muscle (UBERON:0010235) | human_reference_atlas | | superior pubic ramus (UBERON:0014438) | human_reference_atlas | | external cervical os (UBERON:0013760) | human_reference_atlas | | frontal crest of frontal bone (UBERON:1200047) | human_reference_atlas | | arrector muscle of hair (UBERON:0002033) | human_reference_atlas | | superior vertebral notch of second cervical vertebra (UBERON:1200256) | human_reference_atlas | | groove for subclavian artery of first rib (UBERON:1200060) | human_reference_atlas | | epidermal ridge of digit (UBERON:0013487) | human_reference_atlas | | superior articular facet of third thoracic vertebra (UBERON:1200248) | human_reference_atlas | | iliocostalis cervicis muscle (UBERON:0008546) | human_reference_atlas | | supramastoid crest of squamous part of temporal bone (UBERON:1200259) | human_reference_atlas | | mastoid foramen of mastoid part of temporal bone (UBERON:1200138) | human_reference_atlas | | mental protuberance of mandible (UBERON:1200144) | human_reference_atlas | | non-articular facet of tubercle of ninth rib (UBERON:1200153) | human_reference_atlas | | incisive foramen (UBERON:0012315) | human_reference_atlas | | mylohyoid groove of mandible (UBERON:1200145) | human_reference_atlas | | opponens digiti minimi of hand (UBERON:0036176) | human_reference_atlas | | facet of tenth rib (UBERON:1200040) | human_reference_atlas | | urethral sphincter (UBERON:0004917) | human_reference_atlas | | superior articular facet of second cervical vertebra (UBERON:1200238) | human_reference_atlas | | groove for middle meningeal a. of parietal bone (UBERON:1200056) | human_reference_atlas | | papillary layer of dermis (UBERON:0001992) | human_reference_atlas | | pubic body of pubis of os coxa (UBERON:1200182) | human_reference_atlas | | pectinal line of femur (UBERON:1200167) | human_reference_atlas | | costal groove of twelfth rib (UBERON:1200029) | human_reference_atlas | | scapular spine of scapula (UBERON:1200199) | human_reference_atlas | | head of third middle phalanx of hand (UBERON:1200072) | human_reference_atlas | | supraglenoid tubercle (UBERON:0010760) | human_reference_atlas | | vertebral arch of fourth lumbar vertebra (UBERON:1200296) | human_reference_atlas | | tibial plateau of tibia (UBERON:1200264) | human_reference_atlas | | lesser palatine foramen (UBERON:7500084) | human_reference_atlas | | posterior superior iliac spine (UBERON:0013710) | human_reference_atlas | | shaft of first distal phalanx of hand (UBERON:1200201) | human_reference_atlas | | scapular notch of scapula (UBERON:1200198) | human_reference_atlas | | rhombomere (UBERON:0001892) | human_reference_atlas | | anterior internodal tract (UBERON:0015125) | human_reference_atlas | | mammillary process of fourth lumbar vertebra (UBERON:1200131) | human_reference_atlas | | anterolateral tubercle of tibia (UBERON:1200013) | human_reference_atlas | | fibular trochlea of calcaneus (UBERON:1200044) | human_reference_atlas | | anterior ethmoidal foramen (UBERON:0018653) | human_reference_atlas | | pedicle of second cervical vertebra (UBERON:1200169) | human_reference_atlas | | intermediate sacral crest of sacrum (UBERON:1200114) | human_reference_atlas | | sternal end of tenth rib (UBERON:1200218) | human_reference_atlas | | frontalis muscle belly (UBERON:0010952) | human_reference_atlas | | tensor fasciae latae muscle (UBERON:0001376) | human_reference_atlas | | transverse costal facet of seventh thoracic vertebra (UBERON:1200272) | human_reference_atlas | | right crus of diaphragm (UBERON:0014766) | human_reference_atlas | | alveolar border of mandible (UBERON:1200007) | human_reference_atlas | | superior articular facet of fourth cervical vertebra (UBERON:1200234) | human_reference_atlas | | medial malleolus of tibia (UBERON:1200140) | human_reference_atlas | | non-articular facet of tubercle of tenth rib (UBERON:1200157) | human_reference_atlas | | mucosa of infundibulum of uterine tube (UBERON:0005049) | human_reference_atlas | | vertebral arch of sixth thoracic vertebra (UBERON:1200305) | human_reference_atlas | | inferior articular facet of ninth thoracic vertebra (UBERON:1200092) | human_reference_atlas | | superior articular facet of third lumbar vertebra (UBERON:1200247) | human_reference_atlas | | cervical mucosa (UBERON:0012248) | human_reference_atlas | | vertebral arch of seventh thoracic vertebra (UBERON:1200303) | human_reference_atlas | | shaft of first proximal phalanx of hand (UBERON:1200202) | human_reference_atlas | | vertebral arch of fifth cervical vertebra (UBERON:1200290) | human_reference_atlas | | mandibular fossa of squamous part of temporal bone (UBERON:1200136) | human_reference_atlas | | superior articular process of first cervical vertebra (UBERON:1200250) | human_reference_atlas | | tuberosity of fourth distal phalanx of hand (UBERON:1200283) | human_reference_atlas | | digastric fossa of mandible (UBERON:1200032) | human_reference_atlas | | tuberosity of third distal phalanx of hand (UBERON:1200285) | human_reference_atlas | | vidian canal (UBERON:0018373) | human_reference_atlas | | greater wings of sphenoid bone (UBERON:1200054) | human_reference_atlas | | alae of sacrum (UBERON:1200006) | human_reference_atlas | | mammillary process of third lumbar vertebra (UBERON:1200133) | human_reference_atlas | | non-articular facet of tubercle of seventh rib (UBERON:1200155) | human_reference_atlas | | sphenoidal sinus (UBERON:0001724) | human_reference_atlas | | pedicle of first cervical vertebra (UBERON:1200168) | human_reference_atlas | | anterior mediastinal lymph node (UBERON:0035520) | human_reference_atlas | | lateral process of tuberosity of calcaneus (UBERON:1200123) | human_reference_atlas | | sternal angle of sternum (UBERON:1200208) | human_reference_atlas | | anterior clinoid process of sphenoid bone (UBERON:1200009) | human_reference_atlas | | groove for superior sagittal sinus of parietal bone (UBERON:1200063) | human_reference_atlas | | ischial spine (UBERON:0009000) | human_reference_atlas | | cervical os (UBERON:0013758) | human_reference_atlas | | telencephalon (UBERON:0001893) | human_reference_atlas | | base of first distal phalanx of foot (UBERON:1200018) | human_reference_atlas | | tuberosity of fifth distal phalanx of hand (UBERON:1200281) | human_reference_atlas | | head of second distal phalanx of hand (UBERON:1200069) | human_reference_atlas | | transverse costal facet of tenth thoracic vertebra (UBERON:1200274) | human_reference_atlas | | transverse muscle of tongue (UBERON:0008583) | human_reference_atlas | | radial groove of humerus (UBERON:1200187) | human_reference_atlas | | acetabular notch (UBERON:0014446) | human_reference_atlas | | acetabular fossa (UBERON:0014445) | human_reference_atlas | | pterygopharyngeal part of superior pharyngeal constrictor (UBERON:0010956) | human_reference_atlas | | external auditory meatus of squamous part of temporal bone (UBERON:1200036) | human_reference_atlas | | acromial process of scapula (UBERON:1200005) | human_reference_atlas | | perpendicular plate of ethmoid bone (UBERON:1200170) | human_reference_atlas | | gluteal tuberosity of femur (UBERON:1200051) | human_reference_atlas | | mammillary process of second lumbar vertebra (UBERON:1200132) | human_reference_atlas | | sternal end of third rib (UBERON:1200219) | human_reference_atlas | | mammillary process of fifth lumbar vertebra (UBERON:1200129) | human_reference_atlas | | inferior articular process of first cervical vertebra (UBERON:1200103) | human_reference_atlas | | infraorbital sensory canal (UBERON:2001811) | human_reference_atlas | | inferior costal facet of eleventh thoracic vertebra (UBERON:1200105) | human_reference_atlas | | non-articular facet of tubercle of fourth rib (UBERON:1200152) | human_reference_atlas | | submandibular gland ducto-acinar unit (UBERON:8000013) | human_reference_atlas | | medial common iliac lymph node (UBERON:0037532) | human_reference_atlas | | articular tubercle of squamous part of temporal bone (UBERON:1200016) | human_reference_atlas | | superior articular facet of eighth thoracic vertebra (UBERON:1200226) | human_reference_atlas | | nasolacrimal canal of maxilla (UBERON:1200147) | human_reference_atlas | | tibialis anterior (UBERON:0001385) | human_reference_atlas | | facet of eleventh rib (UBERON:1200038) | human_reference_atlas | | internal cervical os (UBERON:0013759) | human_reference_atlas | | infra-orbital groove of maxilla (UBERON:0018409) | human_reference_atlas | | superior articular facet of tenth thoracic vertebra (UBERON:1200245) | human_reference_atlas | | facet of twelfth rib (UBERON:1200041) | human_reference_atlas | | greater palatine foramen (UBERON:7500083) | human_reference_atlas | | neck of radius of radius (UBERON:1200148) | human_reference_atlas | | mastoid process of temporal bone (UBERON:0011220) | human_reference_atlas | | vertebral arch of seventh cervical vertebra (UBERON:1200302) | human_reference_atlas | | splenius (UBERON:0002252) | human_reference_atlas | | posterior sacral foramina of sacrum (UBERON:1200175) | human_reference_atlas | | superior articular facet of second lumbar vertebra (UBERON:1200239) | human_reference_atlas | | sacral apex of sacrum (UBERON:1200189) | human_reference_atlas | | vertebral arch of ninth thoracic vertebra (UBERON:1200298) | human_reference_atlas | | anterior superior iliac spine (UBERON:0013708) | human_reference_atlas | | subscapular fossa (UBERON:4200038) | human_reference_atlas | | inferior articular facet of fifth thoracic vertebra (UBERON:1200087) | human_reference_atlas | | sacral canal of sacrum (UBERON:1200190) | human_reference_atlas | | groove for tendon of flexor hallucis longus muscle of calcaneus (UBERON:1200064) | human_reference_atlas | | pterygoid fossa of sphenoid bone (UBERON:1200179) | human_reference_atlas | | posterior clinoid process of sphenoid bone (UBERON:1200173) | human_reference_atlas | | submandibular fossa of mandible (UBERON:1200224) | human_reference_atlas | | middle internodal tract (UBERON:0015126) | human_reference_atlas | | anterior sacral foramina of sacrum (UBERON:1200011) | human_reference_atlas | | jugular foramen (UBERON:0005456) | human_reference_atlas | | infra-orbital foramen of maxilla (UBERON:0018407) | human_reference_atlas | | inferior articular facet of second cervical vertebra (UBERON:1200093) | human_reference_atlas | | vertebral arch of fourth thoracic vertebra (UBERON:1200297) | human_reference_atlas | | sublingual fossa of mandible (UBERON:1200223) | human_reference_atlas | | infraglenoid tubercle of scapula (UBERON:1200110) | human_reference_atlas | | fossa for lacrimal sac of lacrimal bone (UBERON:1200046) | human_reference_atlas | | body of second cervical vertebra (UBERON:1200023) | human_reference_atlas | | constrictor muscle of pharynx (UBERON:0001569) | human_reference_atlas | | superior mental spine of mandible (UBERON:1200253) | human_reference_atlas | | tuberosity of first distal phalanx of hand (UBERON:1200282) | human_reference_atlas | | thyroepiglotticus muscle (UBERON:0010927) | human_reference_atlas | | optic foramen (UBERON:0005745) | human_reference_atlas | | spinous process of first cervical vertebra (UBERON:1200206) | human_reference_atlas | | ischial tuberosity (UBERON:0034983) | human_reference_atlas | | superior articular facet of fourth thoracic vertebra (UBERON:1200236) | human_reference_atlas | | shaft of ulna of ulna (UBERON:1200204) | human_reference_atlas | | iliac fossa (UBERON:0011015) | human_reference_atlas | | inferior articular facet of third thoracic vertebra (UBERON:1200101) | human_reference_atlas | | transverse costal facet of ninth thoracic vertebra (UBERON:1200270) | human_reference_atlas | | mandible neck (UBERON:0004659) | human_reference_atlas | | superior articular facet of fourth lumbar vertebra (UBERON:1200235) | human_reference_atlas | | lacrimal fossa of frontal bone (UBERON:1200120) | human_reference_atlas |
</details>
<details> <summary>Relationships removed: 10</summary>
| Subject| Predicate| Object| ----|----|----| | subcapsular sinus of lymph node (UBERON:0005463) | BFO:0000050 | lymph node (UBERON:0000029) | | trabecular sinus of lymph node (UBERON:8410032) | BFO:0000050 | lymph node (UBERON:0000029) | | gABAergic system (UBERON:0025591) | RO:0002215 | GO:0009448 | | lymph node paracortical sinus (UBERON:8410074) | subClassOf (rdfs:subClassOf) | anatomical conduit (UBERON:0004111) | | ovarian cortex (UBERON:0013191) | BFO:0000050 | ovary stroma (UBERON:0006960) | | lymph node medullary sinus (UBERON:0009744) | subClassOf (rdfs:subClassOf) | anatomical conduit (UBERON:0004111) | | theca cell layer (UBERON:0000155) | subClassOf (rdfs:subClassOf) | reproductive structure (UBERON:0005156) | | granulosa cell layer (UBERON:0005170) | subClassOf (rdfs:subClassOf) | reproductive structure (UBERON:0005156) | | subcapsular sinus of lymph node (UBERON:0005463) | subClassOf (rdfs:subClassOf) | anatomical space (UBERON:0000464) | | trabecular sinus of lymph node (UBERON:8410032) | subClassOf (rdfs:subClassOf) | anatomical space (UBERON:0000464) |
</details>
<details> <summary>Relationships added: 19</summary>
| Subject | Predicate | Object| ----|----|----| | episcleral vein (UBERON:7770011) | subClassOf (rdfs:subClassOf) | craniocervical region vein (UBERON:0009141) | | lymph node medullary sinus (UBERON:0009744) | subClassOf (rdfs:subClassOf) | sinus of lymph node (UBERON:1200004) | | ganglion cell-inner plexiform layer (UBERON:1200341) | BFO:0000050 | retinal neural layer (UBERON:0003902) | | sinus of lymph node (UBERON:1200004) | subClassOf (rdfs:subClassOf) | anatomical conduit (UBERON:0004111) | | ganglion cell-inner plexiform layer (UBERON:1200341) | subClassOf (rdfs:subClassOf) | regional part of nervous system (UBERON:0000073) | | ovarian cortex (UBERON:0013191) | BFO:0000050 | ovary (UBERON:0000992) | | ganglion cell-inner plexiform layer (UBERON:1200341) | BFO:0000051 | inner plexiform layer of retina (UBERON:0001795) | | collagen band (UBERON:1200340) | subClassOf (rdfs:subClassOf) | collection of collagen fibrils (UBERON:0011860) | | ganglion cell-inner plexiform layer (UBERON:1200341) | BFO:0000051 | ganglionic layer of retina (UBERON:0001792) | | gABAergic system (UBERON:0025591) | RO:0002215 | GO:0008152 | | theca cell layer (UBERON:0000155) | subClassOf (rdfs:subClassOf) | epithelium of female gonad (UBERON:0004911) | | gABAergic system (UBERON:0025591) | RO:0002328 | CHEBI:59888 | | granulosa cell layer (UBERON:0005170) | subClassOf (rdfs:subClassOf) | epithelium of female gonad (UBERON:0004911) | | episcleral vein (UBERON:7770011) | BFO:0000050 | episcleral layer of eyeball (UBERON:0010292) | | subcapsular sinus of lymph node (UBERON:0005463) | subClassOf (rdfs:subClassOf) | sinus of lymph node (UBERON:1200004) | | lymph node paracortical sinus (UBERON:8410074) | subClassOf (rdfs:subClassOf) | sinus of lymph node (UBERON:1200004) | | sinus of lymph node (UBERON:1200004) | BFO:0000050 | lymph node (UBERON:0000029) | | trabecular sinus of lymph node (UBERON:8410032) | subClassOf (rdfs:subClassOf) | sinus of lymph node (UBERON:1200004) | | episcleral vein (UBERON:7770011) | subClassOf (rdfs:subClassOf) | head blood vessel (UBERON:0003496) |
</details>
<details> <summary>Text definitions changed: 2</summary>
| Term | Old Text Definition | New Text Definition | ----|----|----| | eyelid (UBERON:0001711) | A fold of skin that covers and protects part of the eyeball. Examples: upper eyelid, lower eyelid, nictitating membrane. | A movable or semi-movable ocular covering that protects the eye and contributes to surface maintenance; structure and composition vary widely among vertebrate species. | | ovarian cortex (UBERON:0013191) | The layer of the ovarian stroma lying immediately beneath the tunica albuginea, composed of connective tissue cells and fibers, among which are scattered primary and secondary (antral) follicles in various stages of development; the cortex varies in thickness according to the age of the individual, becoming thinner with advancing years; included in the follicles are the cumulus oophorus, membrana granulosa (and the granulosa cells inside it), corona radiata, zona pellucida, and primary oocyte; the zona pellucida, theca of follicle, antrum and liquor folliculi are also contained in the follicle; also in the cortex is the corpus luteum derived from the follicles. | The layer of the ovary lying immediately beneath the tunica albuginea, composed of connective tissue cells and fibers, among which are scattered primary and secondary (antral) follicles in various stages of development; the cortex varies in thickness according to the age of the individual, becoming thinner with advancing years; included in the follicles are the cumulus oophorus, membrana granulosa (and the granulosa cells inside it), corona radiata, zona pellucida, and primary oocyte; the zona pellucida, theca of follicle, antrum and liquor folliculi are also contained in the follicle; also in the cortex is the corpus luteum derived from the follicles. |
</details>
<details> <summary>Nodes removed from subset: 4</summary>
| Term | Subset | ----|----| | capillary (UBERON:0001982) | human_reference_atlas | | olfactory tubercle (UBERON:0001883) | human_reference_atlas | | olfactory cortex (UBERON:0002894) | human_reference_atlas | | vasculature (UBERON:0002049) | human_reference_atlas |
</details>
<details> <summary>Mappings added: 5</summary>
| Subject | Predicate | Object | ----|----|----| | episcleral vein (UBERON:7770011) | oio:hasDbXref | FMA:51800 | | epibranchial organ (UBERON:2002116) | oio:hasDbXref | BTO:0004195 | | bony plate (UBERON:2002053) | oio:hasDbXref | BTO:0000967 | | adult organism (UBERON:0007023) | oio:hasDbXref | IDOMAL:0000655 | | maxilla (UBERON:0002397) | oio:hasDbXref | BTO:0006516 |
</details>
<details> <summary>Classes added: 4</summary>
| Term | ----| | collagen band (UBERON:1200340) | | sinus of lymph node (UBERON:1200004) | | episcleral vein (UBERON:7770011) | | ganglion cell-inner plexiform layer (UBERON:1200341) |
</details>
<details> <summary>Synonyms added: 10</summary>
| Term | New Synonym | Predicate | ----|----|----| | collagen band (UBERON:1200340) | subepithelial collagenous band | oio:hasExactSynonym | | collagen band (UBERON:1200340) | subepithelial collagen band | oio:hasExactSynonym | | ganglion cell-inner plexiform layer (UBERON:1200341) | ganglion cell and inner plexiform layer | oio:hasExactSynonym | | sinus of lymph node (UBERON:1200004) | lymphatic sinus | oio:hasExactSynonym | | sinus of lymph node (UBERON:1200004) | lymph node sinus | oio:hasExactSynonym | | collagen band (UBERON:1200340) | collagenous band | oio:hasExactSynonym | | ganglion cell-inner plexiform layer (UBERON:1200341) | GCIPL | oio:hasRelatedSynonym | | neuroectoderm (UBERON:0002346) | neurectoderm | oio:hasExactSynonym | | collagen band (UBERON:1200340) | subepithelial collagen layer | oio:hasExactSynonym | | ganglion cell-inner plexiform layer (UBERON:1200341) | macular ganglion cell-inner plexiform layer | oio:hasRelatedSynonym |
</details>
<details> <summary>Text definitions added: 4</summary>
| Term | New Text Definition | ----|----| | episcleral vein (UBERON:7770011) | A vein located between the bulbar conjunctiva and the sclera. | | sinus of lymph node (UBERON:1200004) | A sinus located in a lymph node. Lymph nodes have subcapsular, cortical (trabecular) and medullary sinuses. | | collagen band (UBERON:1200340) | A band-shaped collection of collagen fibrils forming a distinct layer beneath an epithelium. | | ganglion cell-inner plexiform layer (UBERON:1200341) | A retinal layer complex consisting of the ganglion cell layer and the inner plexiform layer. |
</details>
<details> <summary>Mappings removed: 1</summary>
| Subject | Predicate | Object | ----|----|----| | mesonephric duct (UBERON:0003074) | oio:hasDbXref | BTO:0005990 |
</details>
<details> <summary>Synonyms removed: 1</summary>
| Term | Removed Synonym | ----|----| | neuroectoderm (UBERON:0002346) | neuroectoderm |
</details>
<details> <summary>Nodes renamed: 1</summary>
| ID | Old Label | New Label | ----|----|----| | UBERON:0002346 | neurectoderm | neuroectoderm |
</details>
Merged PRs
- Swap label and exact synonym for UBERON:0002346: neuroectoderm preferred by @dragon-ai-agent in https://github.com/obophenotype/uberon/pull/3683
- Update Claude and GitHub AI automation config by @cmungall in https://github.com/obophenotype/uberon/pull/3690
- Allow ai4c-agent authored PRs in Claude review workflow by @cmungall in https://github.com/obophenotype/uberon/pull/3696
- Use PAT_FOR_PR for dragon-ai execution workflow by @cmungall in https://github.com/obophenotype/uberon/pull/3701
- Fixes #3521 Removes incorrect partonomy for 'ovarian cortex' by @aleixpuigb in https://github.com/obophenotype/uberon/pull/3705
- Add new term: sinus of lymph node (UBERON:9900001) by @dragon-ai-agent in https://github.com/obophenotype/uberon/pull/3621
- Fixes #3640 Update eyelid textual definition by @aleixpuigb in https://github.com/obophenotype/uberon/pull/3641
- Add episcleral vein term (UBERON:7770011) by @cmungall with @Copilot in https://github.com/obophenotype/uberon/pull/3582
- Add bulk NTR ROBOT template generation workflow by @dosumis in https://github.com/obophenotype/uberon/pull/3697
- Update uberon-idranges.owl by @zhengj2007 in https://github.com/obophenotype/uberon/pull/3711
- Update Biomappings by @cthoyt in https://github.com/obophenotype/uberon/pull/3710
- NTR: add collagen band (UBERON:1200005) by @dragon-ai-agent in https://github.com/obophenotype/uberon/pull/3728
- Add term: ganglion cell-inner plexiform layer (UBERON:1200005) by @dragon-ai-agent in https://github.com/obophenotype/uberon/pull/3730
- Refresh imports in preparation of Uberon release by @aleixpuigb in https://github.com/obophenotype/uberon/pull/3731
- Uberon release v2026-06-23 by @aleixpuigb in https://github.com/obophenotype/uberon/pull/3733
New Contributors
- @cmungall with @Copilot made their first contribution in https://github.com/obophenotype/uberon/pull/3582
- @zhengj2007 made their first contribution in https://github.com/obophenotype/uberon/pull/3711
Full Changelog: https://github.com/obophenotype/uberon/compare/v2026-04-01...v2026-06-23
Files
obophenotype/uberon-v2026-06-23.zip
Files
(48.8 MB)
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|---|---|---|
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md5:3f19c35b0a4db42b6e4ec6dd5659dee4
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Additional details
Related works
- Is supplement to
- Software: https://github.com/obophenotype/uberon/tree/v2026-06-23 (URL)
Software
- Repository URL
- https://github.com/obophenotype/uberon