Biodiversity Literature Repository

Submit to community
Liberated Data
Published February 11, 2015 | Version v1
Figure Open

FIGURE 8. Secondary structures for the BoxB and V3 in Roholtiella, gen. nov. (Nostocales, Cyanobacteria)-a tapering and branching cyanobacteria of the family Nostocaceae

Authors/Creators

  • 1. Faculty of Science, University of South Bohemia, Branišovská 31, České Budějovice 370 05, Czech Republic & Institute of Botany of the Czech Academy of Sciences, Dukelská 135, Třeboň, 379 82, Czech Republic
  • 2. Department of Biology, John Carroll University, University Heights, 1 John Carroll Blvd., Ohio 44118, USA
  • 3. Faculty of Science, University of South Bohemia, Branišovská 31, České Budějovice 370 05, Czech Republic & Department of Biology, John Carroll University, University Heights, 1 John Carroll Blvd., Ohio 44118, USA
  • 4. Faculty of Science, University of South Bohemia, Branišovská 31, České Budějovice 370 05, Czech Republic
  • 5. Department of Bioecology and Biological Education, M. Akmullah Bashkir State Pedagogical University, 450000 Ufa, Okt'yabrskoi revolucii 3a, Russian Federation
  • 6. Institute of Soil Biology of the Czech Academy of Sciences, Na Sádkách 7, České Budějovice 370 05, Czech Republic

Description

FIGURE 8. Secondary structures for the BoxB and V3 helices in the ITS regions for Roholtiella spp. and representative outgroup taxa, C. cimrmanii and N. indistinguendum. Arrows and a bold font style show bases variable among species. Helices are arranged by taxon in vertical columns, with taxon label next to the V3 helix. A–F. BoxB helices from operons with both tRNA genes. A. Roholtiella edaphica strains CCALA 1055-56, CCALA 1060-61. B. Roholtiella edaphica strain CCALA 1062. C. Roholtiella mojaviensis strains CCALA 1051- 52. D. Roholtiella bashkiriorum strains CCALA 1057 and 1059. E. Roholtiella fluviatilis strain CCALA 1058. F. Nostoc indistinguendum strain CM1-VF10. G–M. BoxB helices from operons with no tRNA genes. G. Roholtiella edaphica strains CCALA 1055 and 1060. H. Roholtiella edaphica strain CCALA 1062. I. Roholtiella mojaviensis strain CCALA 1052. J. Roholtiella bashkiriorum strain CCALA 1057. K. Roholtiella fluviatilis strain CCALA 1058. L. C. cimrmanii strain CCALA 1012. M. Nostoc indistinguendum strain CM1-VF10. N–T. V3 helices. Circled residues represent alternate bases in different strains, or in the case of R. fluviatilis, between different operons in the same strain. N. The structure without the circled bases was obtained for R. edaphica strains CCALA 1060 (no and both tRNA operons) and CCALA 1056 (no tRNA operon).The alternative structure with the circled bases was obtained for strains CCALA 1061 (no tRNA operon) and CCALA 1055 (no and both tRNA operons). O. Roholtiella edaphica strain CCALA 1062. P. Roholtiella mojaviensis strains CCALA 1051-52. Q. The structure without the circled bases was obtained for R. bashkiriorum strains CCALA 1057 (both tRNA operons) and CCALA 1059 (no tRNA operon). The alternative structure with the circled bases was obtained for strain CCALA 1057 (no tRNA operon). R. The structure without the circled bases was obtained for R. fluviatilis strain CCALA 1058 for the operon with both tRNA. The alternative structure with the circled bases was obtained for the operon with no tRNA. S. C. cimrmanii strain CCALA 1012 showing the

Notes

Published as part of Bohunická, Markéta, Pietrasiak, Nicole, Johansen, Jeffrey R., Gómez, Esther Berrendero, Hauer, Tomáš, Gaysina, Lira A. & Lukešová, Alena, 2015, Roholtiella, gen. nov. (Nostocales, Cyanobacteria)-a tapering and branching cyanobacteria of the family Nostocaceae, pp. 84-103 in Phytotaxa 197 (2) on page 99, DOI: 10.11646/phytotaxa.197.2.2, http://zenodo.org/record/13639648

Files

figure.png

Files (793.8 kB)

Name Size Download all
md5:0ab8dc7902bfc2c242d37ab8f6f83e50
793.8 kB Preview Download

Linked records

Additional details

Related works

Is part of
Journal article: 10.11646/phytotaxa.197.2.2 (DOI)
Journal article: urn:lsid:plazi.org:pub:FFB7460EFFDBA126DF43E376EF6BFFEA (LSID)
Journal article: http://publication.plazi.org/id/FFB7460EFFDBA126DF43E376EF6BFFEA (URL)
Journal article: https://zenodo.org/record/13639648 (URL)