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Published April 10, 2015 | Version v1
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A taxonomic revision of Phytophthora Clade 5 including two new species, Phytophthora agathidicida and P. cocois

Authors/Creators

  • 1. Landcare Research, Private Bag 92170, Auckland, New Zealand
  • 2. University of Hawaii at Manoa, Hawaii, United States of America

Description

Weir, Bevan S., Paderes, Elsa P., Anand, Nitish, Uchida, Janice Y., Pennycook, Shaun R., Bellgard, Stanley E., Beever, Ross E. (2015): A taxonomic revision of Phytophthora Clade 5 including two new species, Phytophthora agathidicida and P. cocois. Phytotaxa 205 (1): 21-38, DOI: 10.11646/phytotaxa.205.1.2, URL: http://dx.doi.org/10.11646/phytotaxa.205.1.2

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urn:lsid:plazi.org:pub:AC6BE94C5C53FFECFF3D8D64FF97FF8D
URL
http://publication.plazi.org/id/AC6BE94C5C53FFECFF3D8D64FF97FF8D

Cites
Publication: 10.1080/0028825X.1987.10410069 (DOI)
Publication: 10.1016/j.fgb.2007.10.010 (DOI)
Publication: 10.1016/S0007-1536(79)80015-7 (DOI)
Publication: 10.1006/fgbi.2000.1202 (DOI)
Publication: 10.3852/mycologia.98.3.365 (DOI)
Publication: 10.1017/S001447979825109X (DOI)
Publication: 10.1023/A:1006810827863 (DOI)
Publication: 10.1016/S0261-3794(99)00028-1 (DOI)
Publication: 10.1017/S0953756298007734 (DOI)
Publication: 10.1017/S0953756203008074 (DOI)
Publication: 10.2307/3759198 (DOI)
Publication: 10.1016/j.fgb.2004.03.007 (DOI)
Publication: 10.1016/j.fgb.2014.02.006 (DOI)
Publication: 10.5248/121.327 (DOI)
Publication: 10.1080/0028825X.1971.10430225 (DOI)
Publication: 10.1093/molbev/msn083 (DOI)
Publication: 10.1186/1471-2148-7-214 (DOI)
Publication: 10.1093/sysbio/sys029 (DOI)
Publication: 10.3852/11-155 (DOI)
Publication: 10.1111/efp.12034 (DOI)
Publication: 10.1094/PD-76-0925 (DOI)
Publication: 10.1007/BF00983006 (DOI)
Has part
Taxonomic treatment: http://treatment.plazi.org/id/505291345C5BFFE7FFB58B6AFAA7FEE0 (URL)
Taxonomic treatment: http://treatment.plazi.org/id/505291345C58FFE7FFB58CFEFBDDFA28 (URL)
Taxonomic treatment: http://treatment.plazi.org/id/505291345C58FFE1FFB588B6FCF2FDAC (URL)
Taxonomic treatment: http://treatment.plazi.org/id/505291345C5EFFE2FFB58F2AFBF6FBB0 (URL)
Figure: 10.5281/zenodo.13639151 (DOI)
Figure: 10.5281/zenodo.13639155 (DOI)
Figure: 10.5281/zenodo.13639157 (DOI)
Figure: 10.5281/zenodo.13639159 (DOI)
Figure: 10.5281/zenodo.13639161 (DOI)
Figure: 10.5281/zenodo.13639165 (DOI)
Figure: 10.5281/zenodo.13639167 (DOI)
Figure: 10.5281/zenodo.13639171 (DOI)

References

  • Ahmed, M. & Ogden, J. (1987) Population dynamics of the emergent conifer Agathis australis (D.Don), Lindl. (kauri) in New Zealand. I. Population structures and tree growth rates in mature stands. New Zealand Journal of Botany 25: 217-229. http://dx.doi.org/10.1080/0028825X.1987.10410069
  • Beever, R.E., Waipara, N.W., Ramsfield T.D., Dick, M.A. & Horner, I.J. (2009) Kauri (Agathis australis) under threat from Phytophthora? In: Goheen, E.M. & Frankel, S.J. (Coords.) Phytophthoras in Forests and Natural Ecosystems. Proceedings of the Fourth Meeting of IUFRO Working Party S07.02.09, General Technical report PSW-GTR-221. USDA Forest Service, Albany, CA, USA, pp. 74-85.
  • Blair, J.E., Coffey, M.D., Park, S.-Y., Geiser, D.M. & Kang, S. (2008) A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences. Fungal Genetics and Biology 45: 266-277. http://dx.doi.org/10.1016/j.fgb.2007.10.010
  • Brasier, C.M. & Griffin, M.J. (1979) Taxonomy of 'Phytophthora palmivora ' on cocoa. Transactions of the British Mycological Society 72: 111-143. http://dx.doi.org/10.1016/S0007-1536(79)80015-7
  • Cooke, D.E.L., Duncan, J.M., Wagels, G. & Brasier, C.M. (2000) A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Genetics and Biology 30: 17-32. http://dx.doi.org/10.1006/fgbi.2000.1202
  • Dance, M.H., Newhook, F.J. & Cole, J.S. (1975) Bioassay of Phytophthora spp. in soil. Plant Disease Reporter 59: 523-527.
  • De Laubenfels, D.J. (1988) Gymnosperme: Flora de la Nouvelle-Caledonie et Dependances. Paris, Museum National d'Histoire Natrurelle, Paris.
  • Drummond, A.J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Duran, C., Field, M., Heled, J., Kearse, M., Markowitz, S., Moir, R., Stones-Havas, S., Sturrock, S., Thierer, T. & Wilson, A. (2011) Geneious v5.4. Available from http://www.geneious.com/.
  • Englander, L., Browning, M. & Tooley, P.W. (2006) Growth and sporulation of Phytophthora ramorum in vitro in response to temperature and light. Mycologia 98 (3): 365-373. http://dx.doi.org/10.3852/mycologia.98.3.365
  • Erwin, D.C. & Ribeiro, O.K. (1996) Phytophthora diseases worldwide. APS Press, St Paul. http://dx.doi.org/10.1017/S001447979825109X
  • Gadgil, P.D. (1974) Phytophthora heveae, a pathogen of kauri. New Zealand Journal of Forestry Science 4: 59-63.
  • Hall, G.S. (1998) Examination of some morphologically unusual cultures of Phytopthora species using a mitochondrial DNA miniprep technique and a standardised sporangium caducity assessment. Mycopathologia 140: 141-147. http://dx.doi.org/10.1023/A:1006810827863
  • Jacoby, W.G. (2000) Loess: a non-parametric graphical tool for depicting relationships between variables. Electoral Studies 19: 577- 613. http://dx.doi.org/10.1016/S0261-3794(99)00028-1
  • Jeffers, S.N. (2006) Identifying species of Phytophthora. Clemson University. Available from: http://fhm.fs.fed.us/sp/sod/misc/culturing_ species_phytophthora.pdf.
  • Jung, T., Cooke. D.E.L., Blaschke. H., Duncan. J.M. & Osswald, W. (1999) Phytophthora quercina sp. nov. causing root rot of European oaks. European Journal of Forest Pathology 29: 169-188. http://dx.doi.org/10.1017/S0953756298007734
  • Jung, T., Nechwatal, J., Cooke, D.E.L., Hartmann, G., Blaschke, M., Osswald, W.F., Duncan, J.M. & Delatour, C. (2003) Phytophthora pseudosyringae sp. nov. a new species causing root and collar rot of deciduous tree species in Europe. Mycological Research 107: 772-789. http://dx.doi.org/10.1017/S0953756203008074
  • Katsura, K. (1976) Two new species of Phytophthora causing damping-off of cucumber and trunk rot of chestnut. Transactions of the Mycological Society of Japan 17: 238-242.
  • Ko, W.H. & Chang, H.S. (1979) Phytophthora katsurae, a new name for P. castaneae. Mycologia 71: 840-844. http://dx.doi.org/10.2307/3759198
  • Kroon, L.P.N.M., Bakker, F.T., van den Bosch, G.B.M., Bonants, P.J.M. & Flier, W.G. (2004) Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences. Fungal Genetics and Biology 41: 766-782. http://dx.doi.org/10.1016/j.fgb.2004.03.007
  • Kroon, L.P., Brouwer, H., de Cock, A.W. & Govers, F. (2012) The genus Phytophthora anno 2012. Phytopathology 102: 348-364.
  • Liyanage, N.I.S. & Wheeler, B.E.J. (1989) Phytophthora katsurae from cocoa. Plant Pathology 38: 627-629.
  • Martin, F.N., Blair, J.E. & Coffey, M.D. (2014) A combined mitochondrial and nuclear multilocus phylogeny of the genus Phytophthora. Fungal Genetics and Biology 66: 19-32. http://dx.doi.org/10.1016/j.fgb.2014.02.006
  • Orellana, R.G. (1959) Variation in Phytophthora palmivora isolates from cacao and rubber. Phytopathology 49: 210-213.
  • Pennycook, S.R. (2013) Phytophthora castaneae, the correct name for P. katsurae nom. nov. superfl. Mycotaxon 121: 327-331. http://dx.doi.org/10.5248/121.327
  • Podger, F.D. & Newhook, F.J. (1971) Phytophthora cinnamomi in indigenous plant communities in New Zealand. New Zealand Journal of Botany 9: 625-638. http://dx.doi.org/10.1080/0028825X.1971.10430225
  • Posada, D. (2008) jModelTest: Phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256. http://dx.doi.org/10.1093/molbev/msn083
  • Quillec, G. & Renard, J.L. (1984) La pourriture a Phytophthora du cocotier. Oleagineux 39: 143-147.
  • Quillec, G., Renard, J.L. & Ghesquiere, H. (1984) Le Phytophthora heveae du cocotier: son role dans la pourriture du coeur et dans la chute des noix. Oleagineux 39: 477-485.
  • R Development Core Team (2013) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0. Available from: http://www.R-project.org.
  • Rambaut, A.J. & Drummond, A. (2007) BEAST Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214- 222. http://dx.doi.org/10.1186/1471-2148-7-214
  • Ronquist, F., Teslenkom M,, Van der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Hulesenbeck, J.P. (2012) Mr Bayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539-542. http://dx.doi.org/10.1093/sysbio/sys029
  • Setoguchi, H., Asakawa Oswa, T., Pintaud, J.-C., Jaffre, T. & Veillon, J.-M. (1998) Phylogenetic relationships within Araucariaceae based on rbcL gene sequences. American Journal of Botany 85 (11): 1507-1516.
  • Stamps, D.J. (1985) Phytophthota katsurae. C.M.I. Descriptions of Pathogenic Fungi and Bacteria No. 837. pp. 1-2.
  • Stielow, J.B., Vaas, L.A., Goeker, M., Hoffmann, P. & Klenk, H.P. (2012) Charcoal filter paper improves the viability of cryopreserved filamentous ectomycorrhizal and saprotrophic Basidiomycota and Ascomycota. Mycologia 104: 324-330. http://dx.doi.org/10.3852/11-155
  • Than, D.J., Hughes, K.J.D., Boonhan, N., Tomlinson, J.A., Woodhall, J.W. & Bellgard, S.E. (2013) A TaqMan real-time PCR assay for the detection of Phytophthora 'taxon Agathis' in soil, pathogen of Kauri in New Zealand. Forest Pathology 43 (4): 324-330. http://dx.doi.org/10.1111/efp.12034
  • Thompson, A.W. (1929) Phytophthora species in Malaya. Malayan Agricultural Journal 17 (3-4): 53-100.
  • Uchida, J.Y. (2004) Phytophthora diseases. In: Elliott, M.L., Broschat, T.K., Uchida, J.Y. & Simone, G.W. (Eds.) Compendium of ornamental palm diseases and disorders. American Phytopathological Society Press, St. Paul, Minnesota, USA. pp. 29-32.
  • Uchida, J.Y., Aragaki, M., Ooka, J.J. & Nagata, N.M. (1992) Phytophthora fruit and heart rots of coconut in Hawaii. Plant Disease 76: 925-927. http://dx.doi.org/10.1094/PD-76-0925
  • Whitmore, T.C. (1977) A first look at Agathis. Tropical Forestry Papers #11. University of Oxford, Commonwealth Forestry Institute.
  • Whitmore, T.C. (1980) A monograph of Agathis. Plant Systematics and Evolution 135: 41-69. http://dx.doi.org/10.1007/BF00983006