Published July 24, 2015
| Version v1
Journal article
Restricted
Morphology and molecular studies on large Neidium species (Bacillariophyta) of North America, including an examination of Ehrenberg's types
Authors/Creators
- 1. Biology and Environmental Science, Centre for Advanced Research in Environmental Genomics, University of Ottawa, Ottawa, Ontario K1N 6N5 Canada
- 2. Research and Collections Division, Canadian Museum of Nature, P.O. Box 3443, Station D., Ottawa, Ontario K1P 6P4 Canada
Description
Lefebvre, Keely E., Hamilton, Paul B. (2015): Morphology and molecular studies on large Neidium species (Bacillariophyta) of North America, including an examination of Ehrenberg's types. Phytotaxa 220 (3): 201-223, DOI: 10.11646/phytotaxa.220.3.1, URL: http://dx.doi.org/10.11646/phytotaxa.220.3.1
Files
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:883DFFF6091D741A8900FFE7DE3AFD0E
- URL
- http://publication.plazi.org/id/883DFFF6091D741A8900FFE7DE3AFD0E
References
- Alverson, A.J., Jansen, R.K. & Theriot, E.C. (2007) Bridging the Rubicon: phylogenetics analysis reveals repeated colonizations of marine and freshwaters by thalassiosiroid diatoms. Molecular Phylogenetic Evolution 45: 193-210. http://dx.doi.org/10.1016/j.ympev.2007.03.024
- Auinger, B., Pfandl, K. & Boenigk, J. (2008) Improved methodology for identification of protists and microalgae from plankton samples preserved in Lugol's iodine solution: combining microscopic analysis with single-cell PCR. Applied Environmental Microbiology 74 (8): 2505-2510. http://dx.doi.org/10.1128/AEM.01803-07
- Bory de Saint-Vincent, J.B.G.M. (1822) Bacillarees. Dictionnaire Classique d'Histoire Naturelle 2: 127-129. http://dx.doi.org/10.5962/bhl.title.33901
- Bruder, K. & Medlin, L.K. (2007) Molecular assessment of phylogenetic relationships in selected species/genera in the Naviculoid diatoms (Bacillariophyta). Nova Hedwigia 85 (3): 331-352. http://dx.doi.org/10.1127/0029-5035/2007/0085-0331
- Camburn, K.E. & Charles, D.F. (2000) Diatoms of Low-Alkalinity Lakes in the Northeastern United States. Scientific Publications, Philadelphia, 152 pp.
- Cantonati, M., Lange-Bertalot, H. & Angeli, N. (2010) Neidiomorpha gen. nov. (Bacillariophyta):A new freshwater diatom genus separated from Neidium Pfitzer. Botanical Studies 51: 195-202.
- Cleve, P.T. (1894) Synopsis of the Naviculoid diatoms. Kongliga Svenska Vetenskaps-Akademiens Handlingar 26 (2): 1-194. http://dx.doi.org/10.5962/bhl.title.54740
- Darriba, D., Taboada, G.L., Doallo, R. & Posada, A.J. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772. http://dx.doi.org/10.1038/nmeth.2109
- Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012) Bayesian phylogenetics with BEAUTi and the BEAST 1.7. Molecular Biology and Evolution 29: 1969-1973.
- Daugbjerg, N. & Andersen, R.A. (1997) A molecular phylogeny of the therokont algae based on analysis of chloroplast-encoded rbcL sequence data. Journal of Phycology 1041: 1031-1041. http://dx.doi.org/10.1111/j.0022-3646.1997.01031.x
- Ehrenberg, C.G. (1843) Verbreitung und Einfluss des mikroskopischen Lebens in Sud- und Nord-Amerika. Abhandlungen der Koniglichen Akademie der Wissenschaften zu Berlin 1841: 291-446.
- Ehrenberg, C.G. (1854) Mikrogeologie. Einundvierzig tafeln mit uber viertausend grossentheils colorirten figuren, Gezeicnet vom Verfasser. Leopold Voss, Leipzig, 40 pls.
- Evans, K., Wortley, A. & Mann, D.G. (2007) An assessment of potential diatom barcode genes (cox1, rbcL, 18S and ITS rDNA) and their effectiveness in determining relationships in Sellephora (Bacillariophyta). Protist 158 (3): 349-364. http://dx.doi.org/10.1016/j.protis.2007.04.001
- Godhe,A., Anderson, D.M. & Rehnstam-Holm, A. (2002) PCR amplification of microalgal DNA for sequencing anad species identification: studies on fixatives and algal growth stages. Harmful Algae 1: 375-382. http://dx.doi.org/10.1016/S1568-9883(02)00049-5
- Guidon, S. & Gascuel, O. (2003) PhyML: A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52 (5): 696-704. http://dx.doi.org/10.1080/10635150390235520
- Guillou, L., Medlin, L.K., Oce, O. & Vaulot, D. (1999) Bolidomonas: A new genus with two species belonging to a new algal class, the Bolidophyceae (Heterkonta). Journal of Phycology 35: 368-381. http://dx.doi.org/10.1046/j.1529-8817.1999.3520368.x
- Guttinger, W. (1989) Collection of SEM micrographs of diatoms series 1. CH-6984 via Soriscio, Pura, 81 pp.
- Hamilton, P.B. & Jahn, R. (2005) Typification of Navicula affinis Ehrenberg: type for the name of the genus Neidium Pfitzer. Diatom Research 20: 281-294. http://dx.doi.org/10.1080/0269249X.2005.9705637
- Hamilton, P.B., Poulin, M. & Walker, D. (1995) Neidium hitchcockii (Ehrenberg) Cleve a morphologically complex taxon within the genus Neidium (Naviculales Bacillariophyta). In: Kociolek, J.P. & Sullivan, M.J. (Eds.) A Century of Diatom Research in North America: a Tribute to the Distinguished Careers of Charles W. Reimer and Ruth Patrick, Koeltz Scientific Books Champaign, pp. 66-77.
- Hannen, E.J. van, Mooji, W., Agterveld, M.P. van, Gons, H.J. & Laanbrock, H.J. (1999) Detritus dependent development of the microbial community in an experimental system: Qualitative analysis by denaturing gradient gel electrophoresis. Applied Environmental Microbiology 65: 2478.
- Jasnitsky, V. (1936) Neue und interessante Arten der Diatomeen aus dem Baikalsee. Botanicheskii Zhurnal 21 (6): 689-703.
- Kaczmarksa, I., Mather, L., Luddington, I.A., Muise, F. & Ehrman, J.M. (2014) Cryptic diversity in a cosmopolitan diatom known as Asterionellopsis glacialis (Fragilariaceae): Implications for ecology, biogeography, and taxonomy. American Journal of Botany 101 (2): 267-286. http://dx.doi.org/10.3732/ajb.1300306
- Kociolek, J.P., Laslandes, B., Benett, D., Thomas, E., Brady, M. & Greff, C. (2014) Diatoms of the United States 1. Bibliotheca Diatomologica 1: 1-31.
- Krammer, K. & Lange-Bertalot, H. (1985) Naviculaceae neue und wenig bekannte taxa, neue kombinationen und synonyme sowie bemerkungen zu einigen gattungen. Bibliotheca Diatomologia 9: 1-230.
- Krammer, K. & Lange-Bertalot, H. (1986) Bacillariophyceae. 1. Teil: Naviculaceae. In: Ettl, H., Gerloff, J., Heynig, H. & Mollenhauer, D. (Eds.) Susswasserflora von Mitteleuropa. Gustav Fischer, Stuttgart, pp. 1-876.
- Kutzing, F.T. (1844) Die Kieselschaligen. Bacillarien oder Diatomeen. Zu finden bei W. Kohne, Nordhausen, 152 pp.
- Lagerstedt,N.G.W. (1873) Sotvattens-Diatomaceer fran Spetsbergen och Beeren Eiland. Bihang till Kongliga Svenska Vetenskaps-Akademiens Handlingar 1 (14): 1-52.
- Lang, I. & Kazcmarska, I. (2011) A protocol for single-cell PCR of diatoms from fixed samples: method validation using Ditylum brightwellii (T. West) Grunow. Diatom Research 26: 43-49. http://dx.doi.org/10.1080/0269249X.2011.573703
- Lange-Bertalot, H. & Genkal, S.I. (1999) Diatoms from Siberia I - Islands in the Arctic Ocean (Yugorsky-Shar Strait). Iconographia Diatomologica 6: 1-303.
- Lazarus, D. & Jahn, R. (1998) Using the Ehrenberg collection. Diatom Research 13: 273-291. http://dx.doi.org/10.1080/0269249X.1998.9705451
- Leliart, F., Verbruggen, H., Vanormelingen, P., Steen, F., Lopez-Bautista, J.M., Zuccarello, G.C. & De Clerck, O. (2014) DNA-based species delimitation in algae. European Journal of Phycology 49 (2): 179-196.
- Mann, D.G., Sato, S., Trobajo, R., Vanormelingen, P. & Souffreau, C. (2010) DNA barcoding for species identification and discovery in diatoms. Cryptogamie Algologie 31 (4): 557-577.
- Medlin, L. & Kaczmarska, I. (2004) Evolution of the diatoms. Morphological and cytological support for the major clades and a taxonomic revision. Phycologia 43 (8): 245-270. http://dx.doi.org/10.2216/i0031-8884-43-3-245.1
- Meister, F. (1912) Die Kieselalgen der Schweiz. Beitrage zur Kryptogamenflora der Schweiz. Vol. IV, fasc. 1. K.J. Wyss, Bern, 254 pp.
- Mereschkowsky, C. (1903) Les types de l'endochrome chez les Diatomees. Scripta Botanica Horti Universitatis Imperialis Petropolitanae 21: 1-193
- Metzeltin, D. & Lange-Bertalot, H. (2002) Diatoms from the "island Continent" Madagascar. Iconographia Diatomologica 11: 1-286.
- Metzeltin, D. & Lange-Bertalot, H. (2007) Tropical diatoms of South America II. Special remarks on the biogeographic disjunction. Iconographia Diatomologica 18: 1-877.
- Metzeltin, D. & Lange-Bertalot, H. (2009) Diatoms in Mongolia. Sichuania lacustris spec. & gen. nov. Iconographia Diatomologica 11: 1-70.
- Meyer, C.P. & Paulay, G. (2005) DNA barcoding: error rates based on comprehensive sampling. PLoS Biology 3: 2229-2238. http://dx.doi.org/10.1371/journal.pbio.0030422
- Molder, K. (1937) Einige neue Diatomeen aus Finnland und Estland. Annales Botanici Societatis Zoologicae Botanicae Fennicae 8 (7): 30-32.
- Moniz, M.B.J. & Kaczmarska, I. (2009) Barcoding diatoms: Is there a good marker? Molecular Ecology Resources 9: 65-74. http://dx.doi.org/10.1111/j.1755-0998.2009.02633.x
- Patrick, R. & Reimer, C.W. (1966) The Diatoms of the United States. Vol. 1. Monographs of the Academy of Natural Sciences 13: 1-688.
- Pfitzer, E. (1871) Untersuchungen uber Bau und Entwicklung der Bacillariaceen (Diatomaceen). In: Hanstein, J. (Ed.) Botanische Abhandlungen aus dem Gebiet der Morphologie und Physiologie, Bonn, 189 pp.
- Rambaut, A., Suchard, M.A., Xie, D. & Drummond, A.J. (2014) Tracer v.1.6.
- Ruck, E.C. & Theriot, E.C. (2011) Origin and Evolution of the canal raphe system in diatoms. Protist 162 (5): 723-737. http://dx.doi.org/10.1016/j.protis.2011.02.003
- Ruck, E.C., Nakov, T., Jansen, R.K., Theriot, E.C. & Alverson, A.J. (2014) Serial gene losses and foreign DNA underlie size and sequence variation in the plastid genomes of diatoms. Genome Biology and Evolution 6 (3): 644-654.
- Schmidt, A. (1877) Atlas der Diatomaceen-kunde. Aschersleben, Commissions-Verlag Von Ludwig Siever's Buchandlung, Series II (Heft 13), pls. 49-52.
- Siver, P.A., Hamilton, P.B., Stachura-Suchoples, K. & Kolciolek, J.P. (2003) Morphological observations of Neidium species with sagittate apices, including the description of N. cape-codii sp. nov. Diatom Research 18: 131-148. http://dx.doi.org/10.1080/0269249X.2003.9705578
- Siver, P.A., Hamilton, P.B., Stachura-Suchoples, K. & Kociolek, J.P. (2005) Diatoms of North America: The freshwater flora of Cape Cod, Massachusetts, U.S.A. Iconographia Diatomologica 14: 1-463.
- Smith, W. (1853) Synopsis of the British Diatomaceae, with remarks on their structure, function and distribution, and instructions for collecting and preserving specimens. Vol. 1. John van Voorst, London, 89 pp.
- Souffeau, C., Verbruggen, H., Wolfe, A.P., Vanormelingen, P., Siver, P., Cox, E.J., Mann, D.G., Vijver, B. van de., Sabbe, K. & Vyverman, W. (2011) A time-calibrated multi-gene phylogeny of the diatom genus Pinnularia. Molecular Phylogenetics and Evolution 61 (3): 866-879. http://dx.doi.org/10.1016/j.ympev.2011.08.031
- Souffreau, C., Vanormelingen, P., Vijver, B. van de., Isheva, T., Verleyen, E., Sabbe, K. & Vyverman, W. (2013) Molecular evidence for distinct Antarctic lineages in the cosmopolitan terriestial diatoms Pinnularia borealis and Hantzscia amphioxys. Protist 164: 101-115. http://dx.doi.org/10.1016/j.protis.2012.04.001
- Stosch, H.A. von (1975) An amended terminology of the diatom girdle. Nova Hedwigia 53: 1-35.
- Theriot, E., Ashworth, M., Ruck, E., Nakov, T. & Jansen, R.K. (2010) A preliminary multigene phylogeny of the diatoms (Bacillariophyta): challenges for future research. Plant Ecology and Evolution 143 (3): 278-296. http://dx.doi.org/10.5091/plecevo.2010.418
- Urbankova, P. & Vesela, J. (2013) DNA-barcoding: A case study in the diatom genus Frustulia (Bacillariophyceae). Nova Hedwigia 142: 147-162.
- Witkowski, A., Barka, F., Mann, D.G., Li, C., Weisenborn, J.L.F., Ashworth, M.P., Kurzydlowski, K.J. & Zglobicka, D.S. (2014) A description of Biremis panama sp. nov., a new diatom species from the marine littoral, with an account of the phylogenetic position of Biremis D.G. Mann et E.J. Cox (Bacillariophyceae). PLoS ONE 9 (12): e114508. http://dx.doi.org/10.1371/journal.pone.0114508
- Witt, J.D.S., Threloff, D.L. & Hebert, P.D.N. (2006) DNA-barcoding reveals extraordinary cryptic diversity in an amphipod genus: implications for desert spring conservation. Molecular Ecology 15: 3073-3082.