Biodiversity Literature Repository

Submit to community
Liberated Data
Published October 20, 2015 | Version v1
Journal article Restricted

Splanchnonema-like species in Pleosporales: introducing Pseudosplanchnonema gen. nov. in Massarinaceae

Authors/Creators

  • 1. Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China & Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand & School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
  • 2. Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
  • 3. Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand & School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand
  • 4. A.M.B. Gruppo Micologico Forlivese "A.M.B. Gruppo Micologico Forlivese "Antonio Cicognani", Via Roma 18, Forlì, Italy; A.M.B. Circolo Micologico "Giovanni Carini", C.P. 314, Brescia, Italy; Società per gli Studi Naturalistici della Romagna, C.P. 144, Bagnacavallo (RA), Italy
  • 5. Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don 344090, Russia
  • 6. Botany and Microbiology Department, College of Science, King Saud University, Riyadh, KSA 11442, Saudi Arabia.

Description

Chethana, K.W. Thilini, Liu, Mei, Ariyawansa, Hiran A., Konta, Sirinapa, Wanasinghe, Dhanushka N., Zhou, Ying, Yan, Jiye, Camporesi, Erio, Bulgakov, Timur S., Chukeatirote, Ekachai, Hyde, Kevin D., Bahkali, Ali H., Liu, Jianhua, Li, Xinghong (2015): Splanchnonema-like species in Pleosporales: introducing Pseudosplanchnonema gen. nov. in Massarinaceae. Phytotaxa 231 (2): 133-144, DOI: 10.11646/phytotaxa.231.2.2, URL: http://dx.doi.org/10.11646/phytotaxa.231.2.2

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:FFB9FFB7D171FFB3FF80FFA09D6FFFEC
URL
http://publication.plazi.org/id/FFB9FFB7D171FFB3FF80FFA09D6FFFEC

Cites
Publication: 10.1007/s13225-014-0305-6 (DOI)
Publication: 10.1016/S0024-2829(05)80019-2 (DOI)
Publication: 10.2307/3759283 (DOI)
Publication: 10.2307/3792996 (DOI)
Publication: 10.3767/003158508X314732 (DOI)
Publication: 10.1007/s13225-014-0278-5 (DOI)
Publication: 10.3114/sim.55.1.235 (DOI)
Publication: 10.1093/sysbio/42.2.182 (DOI)
Publication: 10.1007/s13225-013-0263-4 (DOI)
Publication: 10.1093/bib/bbn013 (DOI)
Publication: 10.1111/j.1095-8339.2007.00685.x (DOI)
Publication: 10.1007/BF02100115 (DOI)
Publication: 10.2307/3761695 (DOI)
Publication: 10.1007/s13225-015-0324-y (DOI)
Publication: 10.3114/sim0017 (DOI)
Publication: 10.1093/bioinformatics/btg180 (DOI)
Publication: 10.3114/sim.2009.64.08 (DOI)
Publication: 10.3114/sim.2009.64.09 (DOI)
Publication: 10.1007/S10267-003-0160-X (DOI)
Publication: 10.1007/S10267-005-0245-9 (DOI)
Publication: 10.1093/nar/25.24.4876 (DOI)
Publication: 10.1007/s13225-014-0309-2 (DOI)
Publication: 10.1016/b978-0-12-372180-8.50042-1 (DOI)
Publication: 10.1007/s13225-011-0117-x (DOI)
Has part
Taxonomic treatment: http://treatment.plazi.org/id/038087CFD174FFB5FF08F8E09C83FD5D (URL)
Taxonomic treatment: http://treatment.plazi.org/id/038087CFD177FFBBFF08FD7E9EBFF907 (URL)
Figure: 10.5281/zenodo.13630265 (DOI)
Figure: 10.5281/zenodo.13630267 (DOI)
Figure: 10.5281/zenodo.13630269 (DOI)

References

  • Aptroot, A. (1998) A world revision of Massarina (Ascomycota). Nova Hedwigia 66: 89-162.
  • Ariyawansa, H.A., Tanaka, K., Thambugala, K.M., Phookamsak, R., Tian, Q., Camporesi, E., Hongsanan, S., Monkai, J., Wanasinghe, D.N., Mapook, A., Chukeatirote, E., Kang, J.C., Xu, J.C., McKenzie, E.H.C., Jones, E.B.G. & Hyde, K.D. (2014) A molecular phylogenetic reappraisal of the Didymosphaeriaceae (= Montagnulaceae). Fungal Diversity 68 (1): 69-104. http://dx.doi.org/10.1007/s13225-014-0305-6
  • Armaleo, D. & Clerc, P. (1995) A rapid and inexpensive method for the purification of DNA from lichens and their symbionts.Lichenologists 27: 207-213. http://dx.doi.org/10.1016/S0024-2829(05)80019-2
  • Barr, M.E. (1979) A classification of Loculoascomycetes. Mycologia 71: 935-957. http://dx.doi.org/10.2307/3759283
  • Barr, M.E. (1987) Prodromus to class Loculoascomycetes. Published by the author, Amherst, Massachusetts.
  • Barr, M.E. (1992) Notes on the Lophiostomataceae (Pleosporales). Mycotaxon 45: 191-221.
  • Barr, M.E. (1993) Notes on the Pleomassariaceae. Mycotaxon 49: 129-142.
  • Boise, J. (1983) On Trematosphaeria circinans and reinstatement of the genus Byssothecium. Mycologia 75: 666-669. http://dx.doi.org/10.2307/3792996
  • Bose, S.K. (1961) Studies on Massarina Sacc. and related genera. Phytopathologische Zeitschrift 41: 151-213.
  • Cai, L., Guo, X.Y. & Hyde, K.D. (2008) Morphological and molecular characterisation of a new anamorphic genus Cheirosporium, from freshwater in China. Persoonia 20: 53-58. http://dx.doi.org/10.3767/003158508X314732
  • Chomnunti, P., Hongsanan, S., Aguirre-Hudson, B., Tian, Q., Persoh, D., Dhami, M.K., Alias, A.S., Xu, J.C., Liu, X.Z., Stadler, M. & Hyde, K.D. (2014) The sooty moulds. Fungal Diversity 66: 1-36. http://dx.doi.org/10.1007/s13225-014-0278-5
  • Corda, A.C.J. (1829) Deutschlands Flora, Abt. III. Die Pilze Deutschlands 2: 115.
  • Crous, P.W., Slippers, B., Wingfield, M.J., Rheeder, J., Marasas, W.F.O., Phillips, A.J.L., Alves, A., Burgess, T.I., Barber, P.A. & Groenewald, J.Z. (2006) Phylogenetic lineages in the Botryosphaeriaceae. Studies in Mycology 55: 235-253. http://dx.doi.org/10.3114/sim.55.1.235
  • Ellis, M.B. (1971) Dematiaceous hyphomycetes. Commonwealth Mycological Institute, Kew.
  • Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
  • Hillis, D.M. & Bull, J.J. (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182. http://dx.doi.org/10.1093/sysbio/42.2.182
  • Hyde, K.D., Jones, E.B.G., Liu, J.K., Ariyawansha, H., Eric, B., Boonmee, S., Braun, U., Chomnunti, P., Crous, P.W., Dai, D., Diederich, P., Dissanayake, A., Doilom, M., Doveri, F., Hongsanan, S., Jayawardena, R., Lawrey, J.D., Li, Y.M., Liu, Y.X., Lucking, R., Monkai, J., Nelson, M.P., Phookamsak, R., Muggia, L., Pang, K.L., Senanayake, I., Shearer, C.A., Wijayawardene, N., Wu, H.X., Thambugala, K.M., Suetrong, S., Tanaka, K., Wikee, S., Zhang, Y., Aguirre-Hudson, B., Alias, S.A., Aptroot, A., Bahkali, A.H., Bezerra, J.L., Bhat, J.D., Binder, M., Camporesi, E., Chukeatirote, E., Hoog, S.D., Gueidan, C., Hawksworth, D.L., Hirayama, K., Kang, J.C., Knudsen, K., Li, W.J., Liu, Z.Y., Mapook, A., Raja, H.A., Tian, Q., Scheuer, C., Schumm, F., Taylor, J., Yacharoen, S., Tibpromma, S., Wang, Y., Yan, J.Y. & Zhang, M. (2013) Families of Dothideomycetes. Fungal Diversity 63: 1-313. http://dx.doi.org/10.1007/s13225-013-0263-4
  • Index Fungorum (2015) Index Fungorum. Available from: http://www.indexfungorum.org/names/Names.asp (accessed 6 February 2015)
  • Jayasiri, S.C., Ariyawansa, H.A., Liu, J-K., Jones, E.B.G. & Hyde, K.D. (2015) The Faces of Fungi database: Fungal names linked with morphology, molecular and human attributes. Fungal Diversity. [in press]
  • Katoh, K. & Toh, H. (2008) Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics 9: 276-285. http://dx.doi.org/10.1093/bib/bbn013
  • Kodsueb, R., Lumyong, S., Ho, W.H., Hyde, K.D., Mckenzie, E.H.C. & Jeewon, R. (2007) Morphological and molecular characterization of Aquaticheirospora and phylogenetics of Massarinaceae (Pleosporales). Botanical Journal of the Linnean Society 155: 283-296. http://dx.doi.org/10.1111/j.1095-8339.2007.00685.x
  • Kishino, H. & Hasegawa, M. (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data. Journal of Molecular Evolution 29: 170-179. http://dx.doi.org/10.1007/BF02100115
  • Leroy, P., Gauthier, L. & Barr, M.E. (2000) A little known mushroom parasite of mulberry in France: Splanchnonema phorcioides. Bulletin de la Societe Mycologique de France 116: 209-215.
  • Liew, E.C.Y., Aptroot, A. & Hyde, K.D. (2002) An evaluation of the monophyly of Massarina based on ribosomal DNA sequences. Mycologia 94: 803-813. http://dx.doi.org/10.2307/3761695
  • Liu, J.K., Hyde, K.D., E.B.G. Jones, Ariyawansha, H., Bhat, J.D., Boonmee, S., Maharachchikumbura, S., McKenzie, E.H.C., Phookamsak, R., Phukhamsakda, C., Shenoy, B.D., Abdel-Wahab, M.A., Buyck, B., Chen, J., Chethana, K.W.T., Singtripop, C., Dai, D., Dai, Y., Daranagama, D.A., Dissanayake, A., Doilom, M., D'souza, M.J., Fan, X.L., Goonasekara, I.D., Hirayama, K., Hongsanan, S., Jayasiri, S.C., Jayawardena, R., Karunarathna, S.C., Li, W.J., Mapook, A., Norphanphoun, C., Pang, K.L., Perera, R.H., Persoh, D., Pinruan, U., Senanayake, I., Somrithipol, S., Suetrong, S., Tanaka, K., Thambugala, K.M., Tian, Q., Tibpromma, S., Udayanga, D., Wijayawardene, N., Wanasinghe, D., Wisitrassameewong, K., Abdel-Aziz, F.A., Adamcik, S., Bahkali, A.H., Boonyuen, N., Bulgakov, T., Callac, P., Chomnunti, P., Greiner, K., Hashimoto, A., Hofstetter, V., Kang, J.C., Lewis, D., Li, X.H., Liu, X.X., Liu, Z.Y., Matumura, M., Mortimer, P.E., Rambold, G., Randrianjohany, E., Sato, G., Indrasutdhi, V.S., Tian, C.M., Verbeken, A., von Brackel, W., Wang, Y., Wen, T.C., Xu, J.C., Yan, J.Y., Zhao, R.L. & Camporesi, E. (2015) Fungal Diversity Notes 1-110: Taxonomic and phylogenetic contributions to fungal species. Fungal Diversity 72: 1-197. http://dx.doi.org/10.1007/s13225-015-0324-y
  • Munk, A. (1956) On Metasphaeria coccodes (Karst.) Sacc. and other fungi probably related to Massarina Sacc. (Massarinaceae n. fam.). Friesia 5: 303-308.
  • Nylander, J.A.A. (2004) MrModeltest 2.0. Program distributed author. Evolutionary Biology Centre, Uppsala University.
  • Page, R.D.M. (1996) TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357-358.
  • Quaedvlieg, W., Verkley, G.J.M., Shin, H.D., Barreto, R.W., Alfenas, A.C., Swart, W.J., Groenewald, J.Z. & Crous, P.W. (2013) Sizing up Septoria. Studies in Mycology 75: 307-390. http://dx.doi.org/10.3114/sim0017
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572. http://dx.doi.org/10.1093/bioinformatics/btg180
  • Shearer, C.A., Raja, H.A., Miller, A.N., Nelson, P., Tanaka, K., Hirayama, K., Marvanova, L., Hyde, K.D. & Zhang, Y. (2009) The molecular phylogeny of freshwater Dothideomycetes. Studies in Mycology 64: 145-153. http://dx.doi.org/10.3114/sim.2009.64.08
  • Silvestro, D. & Michalak, I. (2010) RaxmlGUI: a graphical front-end for RAxML.Available from: http://sourceforge.net/projects/raxmlgui/ (accessed 29 September 2015)
  • Suetrong, S., Schoch, C.L., Spatafora, J.W., Kohlmeyer, J., Volkmann-Kohlmeyer, B., Sakayaroj, J., Phongpaicht, S., Tanaka, K., Hairayama, K. & Jones, E.B.G. (2009) Molecular systematics of the marine Dothideomycetes. Studies in Mycology 64: 155-173. http://dx.doi.org/10.3114/sim.2009.64.09
  • Sutton, B.C. (1980) The Coelomycetes. Fungi imperfecti with pycnidia, acervuli and stromata. Commonwealth Mycological Institute. pp 1-696.
  • Swofford, D.L. (2002) PAUP* 4.0: phylogenetic analysis using parsimony (* and other methods). Sinauer Associates, Sunderland.
  • Tanaka, K. & Harada, Y. (2004) Pleosporales in Japan (4): The genus Massariosphaeria. Mycoscience 45: 96-105. http://dx.doi.org/10.1007/S10267-003-0160-X
  • Tanaka, K., Ooki, Y., Hatakeyama, S., Harada, Y. & Barr, M.E. (2005) Pleosporales in Japan (5): Pleomassaria, Asteromassaria, and Splanchnonema. Mycoscience 46: 248-260. http://dx.doi.org/10.1007/S10267-005-0245-9
  • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24: 4876-4882. http://dx.doi.org/10.1093/nar/25.24.4876
  • Thambugala, K.M., Chunfang, Y., Camporesi, E., Bahkali, A.H., Liu, Z-Y. & Hyde, K.D. (2015) Pseudodidymosphaeria gen. nov. in Massarinaceae. Phytotaxa. [in press]
  • Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246.
  • Wijayawardene, N.N., Crous, P.W., Kirk, P.M., Hawksworth, D.L., Boonmee, S., Braun, U., Chomnunti, P., Dai, D.Q., D'souza, M.J., Diederich, P., Dissanayake, A., Doilom, M., Hongsanan, S., Jones, E.B.G., Groenewald, J.Z., Jayawardena, R., Lawrey, J.D., Liu, J.K., Lucking, R., Madrid, H., Manamgoda, D.S., Muggia, L., Nelsen, M.P., Phookamsak, R., Suetrong, S., Tanaka, K., Thambugala, K.M., Wikee, S., Zhang, Y., Aptroot, A., Ariyawansa, H.A., Bahkali, A.H., Bhat, J.D., Gueidan, C., De Hoog, G.S., Knudsen, K., McKenzie, E.H.C., Miller, A.N., Mortimer, P.E., Wanasinghe, D.N., Phillips, A.J.L., Raja, H.A., Slippers, B., Shivas, R.S., Taylor, J.E., Wang, Y., Woudenberg, J.H.C., Piatek, M., Cai, L., Jaklitsch, W.M. & Hyde, K.D. (2014) Naming and outline of Dothideomycetes-2014 including proposals for the protection or suppression of generic names. Fungal Diversity 69: 1-55. http://dx.doi.org/10.1007/s13225-014-0309-2
  • White, T.J., Bruns, T., Lee, S. & Taylor, J.W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR protocols: A guide to methods and applications. Academic, New York, pp. 315-322. http://dx.doi.org/10.1016/b978-0-12-372180-8.50042-1
  • Zhang, Y., Wang, H.K., Fournier, J., Crous, P.W., Jeewon, R., Pointing, S.B. & Hyde, K.D. (2009a) Towards a phylogenetic clarification of Lophiostoma /Massarina and morphologically similar genera in the Pleosporales. Fungal Diversity 38: 85-102.
  • Zhang, Y., Schoch, C.L., Fournier, J., Crous, P.W., Gruyter, J. de, Woudenberg, J.H.C., Hirayama, K., Tanaka, K., Pointing, S.B., Spatafora, J.W. & Hyde, K.D. (2009b) Multi-locus phylogeny of Pleosporales: a taxonomic, ecological and evolutionary re-evaluation. Studies in Mycology 64: 85-102.
  • Zhang, Y., Crous, P.W., Schoch, C.L. & Hyde, K.D. (2012) Pleosporales. Fungal Diversity 53: 1-221. http://dx.doi.org/10.1007/s13225-011-0117-x