Published January 30, 2026
| Version v0.24.2
Software
Open
wfmash: whole-chromosome pairwise alignment using the hierarchical wavefront algorithm
Authors/Creators
Description
wfmash, a new gap-affine pairwise aligner designed to align DNA sequences at a whole-chromosome scale. wfmash applies a hierarchical implementation of the wavefront alignment algorithm to guide the alignment of very long sequences. It scales efficiently to large eukaryotic chromosomes, allowing users to perform pairwise alignment of thousands of large genomes using little time and memory.
Notes
If you use this software, please cite it as below.
Files
waveygang/wfmash-v0.24.2.zip
Files
(29.0 MB)
| Name | Size | Download all |
|---|---|---|
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md5:5a2ca36c5e206a6f09d10c9ca3752385
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Additional details
Related works
- Is supplement to
- Software: https://github.com/waveygang/wfmash/tree/v0.24.2 (URL)
Software
- Repository URL
- https://github.com/waveygang/wfmash