Published August 28, 2024
| Version v3
Dataset
Open
Datasets for: Integrative Mapping of Human CD8+ T Cell in Inflammation and Cancer
Creators
Description
Files for the integrated pan-disease CD8+ T cell atlas:
- huARdb_v2_GEX.CD8.all_genes.h5ad.gz : 19957 genes raw matrix
- huARdb_v2_GEX.CD8.hvg4k.h5ad : 4000 highly variable genes raw matrix
- huARdb_v2_GEX.CD8.hvg4k.X_gex.npy : scatlasavae model embedding
- huARdb_v2_GEX.CD8.clone_subtype.csv : clone type definition
- huARdb_v2_GEX.CD8.hvg4k.supervised.model. scatlasavae model checkpoint
- huARdb_v2_GEX.CD8.hvg4k.h5ad : Tex subset of 4000 highly variable genes raw matrix
- huARdb_v2_GEX.CD8.hvg4k.Tex.supervised.model. scatlasavae model checkpoint for the Tex subset
Files for the TILs CD8+ T cell atlas
- adata_cd8_chu.h5ad. the Chu et al., 2023 Dataset
- adata_cd8_zheng.h5ad. The Zheng et al., 2021 Dataset
Files for the transfer (query) datasets:
Files
huARdb_v2_GEX.CD8.clone_subtype.csv
Files
(10.8 GB)
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md5:200c729889d816f5b62347cf2105f3e0
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219.2 MB | Download |
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md5:de16a20d1c4efed9d64d5c1cd80538ed
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632.8 MB | Download |
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md5:0bbd04fb9ae41a02720cfb582ec4a9c3
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50.7 MB | Download |
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md5:40d5ab2ba96541e25fecff0bc64d171f
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17.7 MB | Download |
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md5:30adc0deb6b95f0204205147b5f8b90c
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86.7 MB | Download |
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md5:df783f8ef1ade89ed1d5c5a26f07a344
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627.5 MB | Download |
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md5:297f15523a14c5d1a1b95b9a1707fba1
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107.6 MB | Download |
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md5:c533c28d174e551ff4d55caf33d96bec
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3.5 GB | Download |
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md5:f2ffb81959d9bb55d36f70ff2efbb208
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106.0 MB | Preview Download |
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md5:6f01951ab77de7f27548584f023940c6
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3.0 GB | Download |
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md5:8751291cf8d1c27caa0fc971a7884f10
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13.8 MB | Download |
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md5:3ee93f3b504cf330239a575729348412
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9.1 MB | Download |
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md5:45858c39fc0aabc8094ff5866bc587f0
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45.0 MB | Download |
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md5:af8d5d1f4095cf8aa368ec4532b7b645
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978.5 MB | Download |
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md5:390f5f7a8ab3e35e5b1ba75245f46d60
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240.1 MB | Download |
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md5:9853156a9b4494f67304ef1e040124ee
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34.7 MB | Download |
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md5:f9453a835e99e3a3284653a7715b8ea2
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64.8 MB | Download |
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md5:38d67ed4d9b2f43f3303bbb84c55f1c2
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1.3 kB | Preview Download |
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md5:2d6f3e9d04727fba4322ea9d0f79f072
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778.5 MB | Download |
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md5:a648a7198aed918a7420df0e4f3aa11c
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54.7 MB | Download |
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md5:2b16eb4f6fa4287ebed4dfca7d199c13
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269.6 MB | Download |
Additional details
Dates
- Updated
-
2024-02-15