Published August 23, 2024 | Version 1.0
Dataset Open

Example Dataset for npstat: Population genetics from Pooled NGS data NPStat v1: User guide

Authors/Creators

  • 1. Centre de Recerca en Agrigenómica
  • 2. ROR icon Universitat de Barcelona

Contributors

Data collector:

  • 1. Centre de Recerca en Agrigenómica
  • 2. University of Barcelona

Description

Example Dataset for npstat to test the program and the different options.

The example dataset contains a pileup file with sequences of of the 2L chromosome from fifteen pooled inbreed individuals of Drosophila melanogaster (doi: 10.1038/nature10811). The dataset also contains the sequence reference of the 2L chromosome  in fasta format, an outgroup sequence in fasta format of D. yakuba (SRR26246471), a GFF3 annotation file and a file with a brief list of selected SNPs to be analyzed.

Files

Example_npstat-v1.zip

Files (286.3 MB)

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Additional details

Funding

Ministerio de Ciencia, Innovación y Universidades
Methods, computational tools and empirical studies focused to the detection of the genomic signals due to selection by domestication PID2020-119255GB-I00

Dates

Available
2024
Example data collected and processed to run npstat

Software

Repository URL
https://github.com/lucaferretti/npstat
Programming language
C
Development Status
Active