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Published August 22, 2024 | Version v1
Dataset Open

PepBench: Dataset for Protein-Binding Peptide Design

Authors/Creators

  • 1. ROR icon Tsinghua University
  • 2. ROR icon Renmin University of China

Description

Datasets and splits of protein-peptide complexes benchmark from PepGLAD.

Rectification: The size of ProtFrag augmentation dataset is 70498 instead of 70645.

Files

README.md

Files (1.9 GB)

Name Size
md5:6fb5d7fd47f96a02cb756f4e10f79286
10.9 MB Download
md5:984fee9c9e0c04acf7aaaafa68099f20
1.7 GB Download
md5:ee4fe49fcd949b43bda27773276d3426
3.0 kB Preview Download
md5:5a55c69395cec42b12d30b187ee65eec
192.6 MB Download

Additional details

References

  • Kong, X., Huang, W., & Liu, Y. (2024). Full-atom peptide design with geometric latent diffusion. arXiv preprint arXiv:2402.13555.