Predicting Protein Synergistic Effect in Arabidopsis using Epigenome Profiling (Source Code)

The provided list outlines the scripts for the QHistone project, each designated with a specific task or analysis related to histone chip-seq data processing and analysis.

• 1_ChIPpeakcall: This script pertains to the peak calling pipeline for histone chip-seq data.
• 2_ChIPdatabase: Scripts for flattening the NarrowPeak file into a matrix format,
• 3_ChIP_SVM: Scripts for GridSearch, Recursive Feature Elimination (RFE), and establish Support Vector Machine (SVM) model for predicting the epigeome profile of query.
• 4_ChIP_tSNE_PCA_MDS: Scripts for conducting t-distributed Stochastic Neighbor Embedding (tSNE), Principal Component Analysis (PCA), and Multidimensional Scaling (MDS) analyses on histone chip-seq data.
• 5_ChIP_hi-cluster: Scripts for hierarchical anlysis of histone chip-seq data.
• 6_ProteinChIPs: This script pertains to the peak calling pipeline for protein chip-seq data.
• 7_QhistoneWeb: Scripts contain Django code for Qhistone website.
• 8_Comprehensive_histone_Analysis: Scripts for comprehensive analysis of histone chip-seqs.
• 9_Selection_of_Machine_Learning_Model: Scripts for test 9 supervised machine learning algorithms.