Published August 22, 2022
| Version 1.4
Dataset
Open
scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files
Creators
- 1. Institute of Pathology, Charité
- 2. Harvard Medical School
- 3. Harvard Medical School, Dana-Farber Cancer Institute, Broad Institute
- 4. Relation Therapeutics
-
5.
Humboldt-Universität zu Berlin
-
6.
University of Edinburgh
- 7. Harvard Medical School, Broad Institute
Description
Collection of h5ad files for RNA and protein single-cell perturbation datasets on scPerturb.org.
For the associated publication, see https://www.nature.com/articles/s41592-023-02144-y.
H5ad files were created using scanpy 1.9.1, using gzip compression.
Notes
Version notes: 1.4 adds more RNA datasets, corrects errors in SrivatsanTrapnell2020_sciplex3 and ShifrutMarson2018
Files
Files
(43.0 GB)
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md5:232f7e3756d41602bbe434b50662a76f
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md5:c9e70629505d98c7ca1a837f62b14e89
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md5:9335b581baba2df02ecf92eed4b56ad7
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253.3 MB | Download |
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md5:739f42ccb24815c4ac1d8ca6d4aa85d8
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md5:74074e99e8e7c5a6297b6a684b72d754
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md5:e01981371cf726f3c7281aaf97500a90
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md5:3efb25a2927c5c228f04f783f18004d8
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md5:2034fe859694fb5458a35cc37a8753c5
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Additional details
Related works
- Is published in
- Preprint: 10.1101/2022.08.20.504663 (DOI)
- Journal article: 10.1038/s41592-023-02144-y (DOI)