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Published August 19, 2024 | Version v4.4.1
Software Open

Earl Grey

Authors/Creators

  • 1. Université de Neuchâtel
  • 2. University of Exeter

Description

  • Updated divergence calculator with fancy plots and a summary table showing TE divergence estimates by family (can be found in summaryFiles at the end of a successful run
  • New experimental earlGreyLibConstruct script: generate a de novo TE library and BEAT it, but skip the annotation steps. Useful for those pangenome peeps out there, as well as those that want to create libraries on an individual-level before combining, manually curating, and then annotating with a final library later on.

Notes

If you use this software, please cite it using the metadata from this file.

Files

TobyBaril/EarlGrey-v4.4.1.zip

Files (3.8 MB)

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md5:ac027811040d4aafee474d36449f353a
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Additional details

Related works

Is supplement to
Software: https://github.com/TobyBaril/EarlGrey/tree/v4.4.1 (URL)