Published August 14, 2024
| Version v2
Software
Open
scASE_py: Python pacakge for loading single cell allele specific data
Authors/Creators
Contributors
Researcher (22):
- Adiconis, Xian
- Haywood, Nathan
- Parker, Jacob
- Zhixiang, Liao
- Tuncali, Idil
- Al'Khafaji, Aziz
- Shin, Asa
- Jagadeesh, Karthik
- Gosik, Kirk
- Gatzen, Michael
- Smith, Jonn
- El Kodsi, Daniel
- Kuras, Yuliya
- Baecher-Allan, Clare
- Serrano, Geidy
- Beach, Thomas
- Garimella, Kiran
- Rozenblatt-Rosen, Orit
- Regev, Aviv
- Dong, Xianjun
- Scherzer, Clemens
- Levin, Joshua
Description
This is a basic python package to enable one to work with the output of our single cell allele specific expression pipeline (ASE). The pipeline itself is present at: https://github.com/seanken/ASE_pipeline
An R package to work with the pipeline, as well as other downstream analysis, is at: https://github.com/seanken/scAlleleExpression
Plan to add more statistical tools to this package as time goes on
Files
scASE_py-main.zip
Files
(7.2 kB)
| Name | Size | Download all |
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md5:3be4873551de24cc398837188d3daa14
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7.2 kB | Preview Download |
Additional details
Funding
- Aligning Science Across Parkinson's
- Parkinson5D: deconstructing proximal disease mechanisms across cells, space, and progression ASAP-000301
Software
- Repository URL
- https://github.com/seanken/scASE_py
- Programming language
- Python
- Development Status
- Wip