Published July 10, 2018
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Fig. 2 in Archaster typicus
Authors/Creators
- 1. Tungkang Biotechnology Research Center, Fisheries Research Institute, Council of Agriculture, Pintung 928, Taiwan.
- 2. Department of Tropical Agriculture and International Cooperation, National Pingtung University of Science & Technology, Pingtung 912, Taiwan. E-mail: tbyen@mail.npust.edu.tw
- 3. Department of Aquaculture, National Pingtung University of Science & Technology, Pingtung 912, Taiwan.
Description
Lee, Yan-Horn, Yen, Tsair-Bor, Chen, Chiu-Fen, Tseng, Mei-Chen (2018): Fig. 2 in Archaster typicus. Zoological Studies 57 (34): 1-13, DOI: 10.6620/ZS.2018.57-34, URL: http://dx.doi.org/10.5281/zenodo.12866614
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- urn:lsid:plazi.org:pub:FFADFFDCFFBAEF28FFB25D593B6BA553
References
- Alvarado-Bremer JR, Naseri I, Ely B. 1997. Orthodox and unorthodox phylogenetic relationships among tunas revealed by the nucleotide sequence analysis of the mitochondrial control region. J Fish Biol 50:540-554.
- Alvarado-Bremer JR, Vinas J, Mejuto J, Ely B, Pla C. 2005. Comparative phylogeography of Atlantic bluefin tuna and swordfish: the combined effects of vicariance, secondary contact, introgression, and population expansion on the regional phylogenies of two highly migratory pelagic fishes. Mol Phylogenet Evol 36:169-187. doi:10.1016/ j.ympev.2004.12.011.
- Aranishi F. 2005. PCR-RFLP analysis of nuclear nontranscribed spacer for mackerel species identification. J Agric Food Chem 53(3):508-511. doi:10.1021/jf0484881.
- Benton MJ (ed). 1993. The Fossil Record 2. Chapman and Hall, London.
- Block BA, Finnerty JR, Stewart AF, Kidd J. 1993. Evolution of endothermy in fish: mapping physiological traits on a molecular phylogeny. Science 260:210-214.
- Carrera E, Garcia T, Cespedes A, Gonzalez I, Fernandez A, Asensio LM, Hernandez PE, Mantin R. 2000. Differentiation of smoked Salmo salar, Oncorhynchus mykiss and Brama raii using the nuclear marker 5S rDNA. Int J Food Sci Tech 35:401-406.
- Carrol RL. 1988. Vertebrate Paleontology and Evolution. WH Freeman and Co., New York.
- Chow S, Kishino H. 1995. Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae: Teleostei): Inconsistent implications from morphology, nuclear and mitochondrial genomes. J Mol Evol 41:741- 748.
- Chow S, Nakagawa T, Suzuki N, Takeyama H, Matsunaga T. 2006. Phylogenetic relationships among Thunnus species inferred from rDNA ITS1 sequence. J Fish Biol 68:24-35. doi:10.1111/j.0022-1112.2006.00945.x.
- Chow S, Nohara K, Tanabe T, Itoh T, Tsuji S, Nishikawa Y, Uyeyanagi S, Uchikawa K. 2003. Genetic and morphological identification of larval and small juvenile tunas (Pisces: Scombridae) caught by a mid-water trawl in the western Pacific. Bull Fish Res Agen 8:1-14.
- Chow S, Okamoto H, Miyabe N, Hiramatsu K, Barut N. 2000. Genetic divergence between Atlantic and Indo-Pacific stocks of bigeye tuna (Thunnus obesus) and admixture around South Africa. Mol Ecol 9:221-227.
- Collette BB. 1978. Adaptations and systematics of the mackerels and tunas. In: Sharp GD, Dizon AE (eds) The physiological ecology of tunas, Academic Press, New York, pp. 7-39.
- Collette BB, Nauen C. 1983. FAO species catalogue, Vol 2. Scombrids of the world: an annotated and illustrated catalogue of tunas, mackerels, bonitos and related species known to date. FAO Fish Synop 125(2):137.
- Diaz-Arce N, Arrizabalagaa H, Muruaa H, Irigoienb X, Rodriguez-Ezpeletaa N . 2016 . RAD-seq derived genome-wide nuclear markers resolve the phylogeny of tunas. Mol Phylogenet Evol 102:202-207. doi:10.1016/ j.ympev.2016.06.002.
- Drouin G, de Sa MM. 1995. The concerted evolution of 5S ribosomal genes linked to the repeat units of other multigene families. Mol Biol Evol 12:481-493.
- Elliott NG, Ward RD. 1995. Genetic relationships of eight species of Pacific tuna (Teleostei, Scombridae) inferred from allozyme analysis. Mar Freshwater Res 46:1021- 1032.
- Farias IP, OrtI G, Sampaio I, Schneider H, Meyer A. 2001. The Cytochrome b gene as a phylogenetic marker: the limits of resolution for analyzing relationships among Cichlid fishes. J Mol Evol 53:89-103.
- Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
- Ferreira IA, Oliveira C, Venere PC, Galetti Jr PM, Martins C. 2007. 5S rDNA variation and its phylogenetic inference in the genus Leporinus (Characiformes: Anostomidae). Genetica 129:253-257. doi:10.1007/s10709-006-0005-6.
- Finnerty JR, Block BA. 1995. Evolution of cytochrome b in the Scombroidei (Teleostei): molecular insights into billfish (Istiophoridae and Xiphiidae) relationships. Fish Bull 93:78-96.
- Fromentin JM, Powers JE. 2005. Atlantic bluefin tuna: population dynamics, ecology, fisheries and management. Fish Fish 6:281-306. doi:10.1111/j.1467-2979.2005.00197. x.
- Gibbs RH Jr, Collette BB. 1967. Comparative anatomy and systematics of the tunas, genus Thunnus. US Fish Wildl Serv Fish Bull 66:65-130.
- Hallenberg C, Frederiksen S. 2001. Effect of mutations in the upstream promoter on the transcription of human 5S rRNA genes. Biochim Biophys Acta 1520:169-173.
- Hardie DC, Hebert PDN. 2004. Genome-size evolution in fishes. Can J Fish Aquat Sci 61:1636-1646.
- Hutchings JA. 2000. Collapse and recovery of marine fishes. Nature 406:882-885.
- Ida H, Oka N, Terashima H, Hayashizaki K. 1993. Karyotypes and cellular DNA contents of three species of the family Scombridae from Japan. Bull Japan Soc Sci Fish 59:1319-1323.
- Johns GC, Avise JC. 1998. A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Mol Biol Evol 15:1481-1490.
- Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111.
- Klinkhardt M, Tesche M, Greven H. 1995. Database of fish chromosomes. Westarp Wissenschaften. Magdeburg, Germany.
- Ledley RS, Lubs HA, Ruddle RH. 1972. Introduction to chromosome analysis. Comput Biol Med 2:107-128.
- Levan A, Fredga K, Sandberg AA. 1964. Nomenclature for centromeric position on chromosomes. Hereditas 52:201- 220.
- MacKenzie BR, Mosegaard H, Rosenberg AA. 2008. Impending collapse of bluefin tuna in the northeast Atlantic and Mediterranean. Conserv Lett 2:26-35.
- Magadum S , Banerjee U , Murugan P, Gangapur D , Ravikesavan R. 2013. Gene duplication as a major force in evolution. J Genet 92:155-161. doi:10.1007/s12041- 013-0212-8.
- Martins C, Galetti PM. 1999. Chromosomal localization of 5S rDNA genes in Leporinus fish (Anostomidae, Characiformes). Chrom Res 7:363-367.
- Martins C, Wasko AP. 2004. Organization and evolution of 5S ribosomal DNA in the fish genome. In: Williams CR (ed) Focus on Genome Research. Nova Science Publishers, Hauppauge, pp. 289-318.
- Murofushi M, Aoki H. 1979. Karyological study in Scomber japonicus. Rep Mishima Res Inst Sci Liv, Nihon Univ. 2:37-40. (in Japanese with English abstract)
- Nei M, Kumar S. 2000. Molecular Evolution and Phylogenetics. Oxford University Press, New York.
- Pendas AM, Moran P, Martinez JL, Garcia-Vasquez E. 1995. Applications of 5S rDNA in Atlantic salmon, brow trout, and in Atlantic salmon × brown trout hybrid identification. Mol Ecol 4:275-276.
- Pieler T, Hamm J, Roeder RG. 1987. The 5S gene internal control region is composed of three distinct sequence elements, organized as two functional domains with variable spacing. Cell 48:91-100.
- Posada D, Buckley TR. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst Biol 53:793-808.
- Ratty FJ, Song YC, Laurs RM. 1986. Chromosomal analysis of albacore, Thunnus alalunga, and yellowfin, Thunnus albacares, and skipjack, Katsuwonus pelamis, tuna. Fish Bull 84:469-476.
- Sharp GD, Pirages SW. 1978. The distribution of red and white swimming muscles, their biochemistry, and the biochemical phylogeny of selected scombrid fishes. In: Sharp GD, Dizon AE (eds). The Physiological Ecology of Tunas. Academic Press, New York, pp. 41-78.
- Sullivan J. 2005. Maximum-likelihood methods for phylogeny estimation. Methods Enzymol 395:757-799.
- Takai A, Izutsu H. 2008. Diversified chromosomal characteristics in Centropyge fishes (Pomacanthidae, Perciformes). Hydrobiologia 603:15. doi:10.1007/s10750-007-9242-7.
- Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Mol Biol Evol 30(12):2725-2729. doi:10.1093/ molbev/mst197.
- Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
- Tseng MC, Shiao JC, Hung YH. 2011. Genetic identification of Thunnus orientalis, T. thynnus, and T. maccoyii by a cytochrome b gene analysis. Environ Biol Fishes 91:103- 115. doi:10.1007/s10641-010-9764-0.
- Veldhoen N, You Q, Setzer DR, Romaniuk PJ. 1994. Contribution of individual base pairs to the interaction of TFIIIA with the Xenopus 5S RNA gene. Biochemistry 33:7568-7575.
- Vinas J, Tudela S. 2009. A validated methodology for genetic identification of tuna species (Genus Thunnus). PLoS ONE 4:e7606. doi:10.1371/journal.pone.0007606.
- Ward RD. 1995. Population genetics of tunas. J Fish Biol 47 (supplement A):259-280.