v1.9.5

What's Changed Across v1.9

• v1.9.5:
  • Adding functionality to check and enforce that Snakemake and Singularity are in the user's $PATH.
  • Updating usage of download_dme_files to include a list of important env variables to export and fixing bug related to variable expansion
• v1.9.4: Updating fastqc rules due to a potential gpfs filesystem issue to use local disk for the temp directory
• v1.9.3: Sort bam files using samtools in single-end rules, avoids a ulimit issue with STAR, samtools is also faster/more efficient too
• v1.9.2: Importing json module from standard library, no longer implicitly loaded by Snakemake in newer versions
• v1.9.1: Updating helper script to run rMATS from an RNA-seek output directory

Full Changelog: https://github.com/skchronicles/RNA-seek/compare/v1.9.4...v1.9.5