Published April 30, 2024
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Investigating the pathogens associated with Dermacentor nuttalli and its global distribution: A study integrating metagenomic sequencing, meta-analysis and niche modeling
Authors/Creators
- 1. Institute of EcoHealth, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China
- 2. State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
- 3. Institute of EcoHealth, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China & State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
Description
Wei, Hua, Xiong, Tao, Wang, Shan-Shan, Wang, Bai-Hui, Du, Li-Feng, Xu, Qing, Zheng, Jia-Jing, Cui, Xiao-Ming, Jia, Na, Jiang, Jia-Fu, Shi, Wenqiang, Zhao, Lin, Cao, Wu-Chun (2024): Investigating the pathogens associated with Dermacentor nuttalli and its global distribution: A study integrating metagenomic sequencing, meta-analysis and niche modeling. International Journal for Parasitology: Parasites and Wildlife 23: 100907, DOI: 10.1016/j.ijppaw.2024.100907, URL: http://dx.doi.org/10.1016/j.ijppaw.2024.100907
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References
- Altantogtokh, D., Lilak, A.A., Takhampunya, R., Sakolvaree, J., Chanarat, N., Matulis, G., Poole-Smith, B.K., Boldbaatar, B., Davidson, S., Hertz, J., Bolorchimeg, B., Tsogbadrakh, N., Fiorenzano, J.M., Lindroth, E.J., von Fricken, M.E., 2022. Metagenomic profiles of Dermacentor tick pathogens from across Mongolia, using next generation sequencing. Front. Microbiol. 13, 946631.
- Balduzzi, S., Rucker, G., Schwarzer, G., 2019. How to perform a meta-analysis with R: a practical tutorial. Evid. Base Ment. Health 22, 153-160.
- Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., Lesin, V. M., Nikolenko, S.I., Pham, S., Prjibelski, A.D., Pyshkin, A.V., Sirotkin, A.V., Vyahhi, N., Tesler, G., Alekseyev, M.A., Pevzner, P.A., 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477.
- Bouchard, C., Dibernardo, A., Koffi, J., Wood, H., Leighton, P.A., Lindsay, L.R., 2019. N Increased risk of tick-borne diseases with climate and environmental changes. Can. Commun. Dis. Rep. 45, 83-89.
- Chen, Z., Yang, X., Bu, F., Yang, X., Yang, X., Liu, J., 2010. Ticks (acari: ixodoidea: argasidae, ixodidae) of China. Exp. Appl. Acarol. 51, 393-404.
- Cobos, M.E., Peterson, A.T., Barve, N., Osorio-Olvera, L., 2019. kuenm: an R package for detailed development of ecological niche models using Maxent. PeerJ 7, e6281.
- Dubourg, G., Socolovschi, C., Del Giudice, P., Fournier, P.E., Raoult, D., 2014. Scalp eschar and neck lymphadenopathy after tick bite: an emerging syndrome with multiple causes. Eur. J. Clin. Microbiol. Infect. Dis. 33, 1449-1456.
- Echevarria-Zubero, R., Porras-Lopez ´, E., Campelo-Guti´errez, C., Rivas-Crespo, J.C., Lucas, A.M., Cobo-V´azquez, E., 2021. Lymphangitis-associated rickettsiosis by Rickettsia sibirica mongolitimonae. J. Pediatric Infect. Dis. Soc. 10, 797-799.
- Eldin, C., M´elenotte, C., Mediannikov, O., Ghigo, E., Million, M., Edouard, S., Mege, J.L., Maurin, M., Raoult, D., 2017. From Q fever to Coxiella burnetii infection: a Paradigm change. Clin. Microbiol. Rev. 30, 115-190.
- Elith, J., Graham, C.H., Anderson, R.P., Dudik, M., Ferrier, S., Guisan, A., Hijmans, R.J., Huettmann, F., Leathwick, J.R., Lehmann, A., 2010. Novel methods improve prediction of species' distributions from occurrence data. Ecography 29, 129-151.
- Emms, D.M., Kelly, S., 2019. OrthoFinder: phylogenetic orthology inference for comparative genomics. Genome Biol. 20, 238.
- Espana t, P.P., Uranga, A., Cilloniz ´, C., Torres, A., 2020. Q fever (Coxiella burnetii). Semin. Respir. Crit. Care Med. 41, 509-521.
- Estrada-Pena t, A., 2008. Climate, niche, ticks, and models: what they are and how we should interpret them. Parasitol. Res. 103 (Suppl. 1), S87-S95.
- Fischer, T., Myalkhaa, M., Krucken, J., Battsetseg, G., Batsukh, Z., Baumann, M.P.O., Clausen, P.H., Nijhof, A.M., 2020. Molecular detection of tick-borne pathogens in bovine blood and ticks from Khentii, Mongolia. Transbound Emerg. Dis. 67 (Suppl. 2), 111-118.
- Foley, D.H., Rueda, L.M., Peterson, A.T., Wilkerson, R.C., 2008. Potential distribution of two species in the medically important Anopheles minimus complex (Diptera: Culicidae). J. Med. Entomol. 45, 852-860.
- Gerstengarbe, F.W., Werner, P.C., 2008. Climate development in the last century - global and regional. Int. J. Med. Microbiol.: IJMM 298, 5-11.
- Gilbert, L., 2021. The impacts of climate change on ticks and tick-borne disease risk. Annu. Rev. Entomol. 66, 373-388.
- Gui, Z., Wu, L., Cai, H., Mu, L., Yu, J.F., Fu, S.Y., Si, X.Y., 2021. Genetic diversity analysis of Dermacentor nuttalli within Inner Mongolia, China. Parasites Vectors 14, 131.
- Guo, W.B., Shi, W.Q., Wang, Q., Pan, Y.S., Chang, Q.C., Jiang, B.G., Cheng, J.X., Cui, X. M., Zhou, Y.H., Wei, J.T., Sun, Y., Jiang, J.F., Jia, N., Cao, W.C., 2021. Distribution of Dermacentor silvarum and associated pathogens: meta-analysis of global published data and a field survey in China. Int. J. Environ. Res. Publ. Health 18.
- Hosseini-Vasoukolaei, N., Oshaghi, M.A., Shayan, P., Vatandoost, H., Babamahmoudi, F., Yaghoobi-Ershadi, M.R., Telmadarraiy, Z., Mohtarami, F., 2014. Anaplasma infection in ticks, livestock and human in Ghaemshahr, Mazandaran province, Iran. J. Arthropod Borne Dis. 8, 204-211.
- Huang, T., Zhang, J., Sun, C., Liu, Z., He, H., Wu, J., Geriletu, 2020. A novel arthropod host of brucellosis in the arid steppe ecosystem. Front. Vet. Sci. 7, 566253.
- Husin, N.A., Khoo, J.J., Zulkifli, M.M.S., Bell-Sakyi, L., AbuBakar, S., 2021. Replication kinetics of Rickettsia raoultii in tick cell lines. Microorganisms 9.
- Iduu, N., Barua, S., Falkenberg, S., Armstrong, C., Stockler, J.W., Moye, A., Walz, P.H., Wang, C., 2023. Theileria orientalis Ikeda in cattle, Alabama, USA. Vet. Sci. 10.
- Javkhlan G, E.B., Baigal, B., Myagmarsuren, P., Battur, B., Battsetseg, B., 2014. Natural Anaplasma phagocytophilum infection in ticks from a forest area of Selenge province, Mongolia. Western Pac. Surveill. Response J. 5, 21-24.
- Jia, N., Zheng, Y.C., Ma, L., Huo, Q.B., Ni, X.B., Jiang, B.G., Chu, Y.L., Jiang, R.R., Jiang, J.F., Cao, W.C., 2014. Human infections with Rickettsia raoultii, China. Emerg. Infect. Dis. 20, 866-868.
- Kahlon, A., Ojogun, N., Ragland, S.A., Seidman, D., Troese, M.J., Ottens, A.K., Mastronunzio, J.E., Truchan, H.K., Walker, N.J., Borjesson, D.L., Fikrig, E., Carlyon, J.A., 2013. Anaplasma phagocytophilum Asp14 is an invasin that interacts with mammalian host cells via its C terminus to facilitate infection. Infect. Immun. 81, 65-79.
- Kang, D.D., Li, F., Kirton, E., Thomas, A., Egan, R., An, H., Wang, Z., 2019. MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies. PeerJ 7, e7359.
- Katoh, K., Misawa, K., Kuma, K., Miyata, T., 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30, 3059-3066.
- Kazar, J., 2005. Coxiella burnetii infection. Ann. N. Y. Acad. Sci. 1063, 105-114.
- Kobayashi, T., Tateishi, R., Alsaaideh, B., Sharma, R.C., Wakaizumi, T., Miyamoto, D., Bai, X., Long, B.D., Gegentana, G., Maitiniyazi, A., 2017. Production of Global Land Cover Data - GLCNMO2013. J. Geograph. Geol. 9 (3), 1-15. https://doi.org/ 10.5539/jgg.v9n3p1, 2017.
- Larson, S.R., DeGroote, J.P., Bartholomay, L.C., Sugumaran, R., 2010. Ecological niche modeling of potential West Nile virus vector mosquito species in Iowa. J. Insect. Sci. 10, 110.
- Li, H., Zhang, P.H., Huang, Y., Du, J., Cui, N., Yang, Z.D., Tang, F., Fu, F.X., Li, X.M., Cui, X.M., Fan, Y.D., Xing, B., Li, X.K., Tong, Y.G., Cao, W.C., Liu, W., 2018. Isolation and identification of Rickettsia raoultii in human cases: a surveillance study in 3 medical centers in China. Clin. Infect. Dis. 66, 1109-1115.
- Marrie, T.J., 1995. Coxiella burnetii (Q fever) pneumonia. Clin. Infect. Dis. 21 (Suppl. 3), S253-S264.
- Martin, J.T., Fischhoff, I.R., Castellanos, A.A., Han, B.A., 2022. Ecological predictors of zoonotic vector status among dermacentor ticks (Acari: ixodidae): a trait-based approach. J. Med. Entomol. 59, 2158-2166.
- Minh, B.Q., Schmidt, H.A., Chernomor, O., Schrempf, D., Woodhams, M.D., von Haeseler, A., Lanfear, R., 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol. Biol. Evol. 37, 1530-1534.
- Mori, M., Mertens, K., Cutler, S.J., Santos, A.S., 2017. Critical aspects for detection of Coxiella burnetii. Vector Borne Zoonotic Dis. 17, 33-41.
- Barber´an, M., Vizcaino, N., Moriy´on, I., Blasco, J.M., 2022. A Brucella melitensis H38ΔwbkF rough mutant protects against Brucella ovis in rams. Vet. Res. 53, 16.
- Ogden, N.H., Lindsay, L.R., 2016. Effects of climate and climate change on vectors and vector-borne diseases: ticks are different. Trends Parasitol. 32, 646-656.
- Parks, D.H., Imelfort, M., Skennerton, C.T., Hugenholtz, P., Tyson, G.W., 2015. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res. 25, 1043-1055.
- Peterson, A.T., Pape, M., 2007. Potential geographic distribution of the Bugun Liocichla. Indian Birds 2, 146-149.
- Phillips, S., Dudik, M., Schapire, R., 2017. A Brief Tutorial on Maxent. https://biodive rsityinformatics.amnh.org/open_source/maxent/Maxent_tutorial2017.pdf.
- Christensen, M., 2022. The Piroplasmida Babesia, Cytauxzoon, and Theileria in farm and companion animals: species compilation, molecular phylogeny, and evolutionary insights. Parasitol. Res. 121, 1207-1245.
- Seemann, T., 2014. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30, 2068-2069.
- Sekeyova, Z., Subramanian, G., Mediannikov, O., Diaz, M.Q., Nyitray, A., Blaskovicova, H., Raoult, D., 2012. Evaluation of clinical specimens for Rickettsia, Bartonella, Borrelia, Coxiella, Anaplasma, Franciscella and Diplorickettsia positivity using serological and molecular biology methods. FEMS Immunol. Med. Microbiol. 64, 82-91.
- Simtao, F.A., Waterhouse, R.M., Ioannidis, P., Kriventseva, E.V., Zdobnov, E.M., 2015. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31, 3210-3212.
- St John, H.K., Adams, M.L., Masuoka, P.M., Flyer-Adams, J.G., Jiang, J., Rozmajzl, P.J., Stromdahl, E.Y., Richards, A.L., 2016. Prevalence, distribution, and development of an ecological niche model of dermacentor variabilis ticks positive for Rickettsia montanensis. Vector Borne Zoonotic Dis. 16, 253-263.
- Sun, Y., Li, S.G., Jiang, J.F., Wang, X., Zhang, Y., Wang, H., Cao, W.C., 2014. Babesia venatorum infection in child, China. Emerg. Infect. Dis. 20, 896-897.
- Valencia-Rodriguez, D., Jim´enez-Segura, L., Rog´eliz, C.A., Parra, J.L., 2021. Ecological niche modeling as an effective tool to predict the distribution of freshwater organisms: the case of the Sabaleta Brycon henni (Eigenmann, 1913). PLoS One 16, e0247876.
- V´azquez-P´erez, A ´., Rodriguez-Granger, J., Calatrava-Hern´andez, E., Santos-P´erez, J.L., 2022. Pediatric tubular acute lymphangitis caused by Rickettsia sibirica mongolitimonae: case report and literature review. Enferm. Infecc. Microbiol. Clin. 40, 218-219.
- von Fricken, M.E., Qurollo, B.A., Boldbaatar, B., Wang, Y.W., Jiang, R.R., Lkhagvatseren, S., Koehler, J.W., Moore, T.C., Nymadawa, P., Anderson, B.D., Matulis, G., Jiang, J.F., Gray, G.C., 2020. Genetic diversity of Anaplasma and Ehrlichia bacteria found in dermacentor and Ixodes ticks in Mongolia. Ticks Tick Borne Dis. 11, 101316.
- Wang, S.S., Liu, J.Y., Wang, B.Y., Wang, W.J., Cui, X.M., Jiang, J.F., Sun, Y., Guo, W.B., Pan, Y.S., Zhou, Y.H., Lin, Z.T., Jiang, B.G., Zhao, L., Cao, W.C., 2023. Geographical distribution of Ixodes persulcatus and associated pathogens: analysis of integrated data from a China field survey and global published data. One Health 16, 100508.
- Warren, D.L., Glor, R.E., Turelli, M., 2010. ENMTools: a toolbox for comparative studies of environmental niche models. Ecography 33, 607-611. https://doi.org/10.1111/j. 1600-0587.2009.06142.x.
- Watts, J.G., Playford, M.C., Hickey, K.L., 2016. Theileria orientalis: a review. N. Z. Vet. J. 64, 3-9.
- Wellenreuther, M., Larson, K.W., Svensson, E.I., 2012. Climatic niche divergence or conservatism? Environmental niches and range limits in ecologically similar damselflies. Ecology 93, 1353-1366.
- Wood, D.E., Lu, J., Langmead, B., 2019. Improved metagenomic analysis with Kraken 2. Genome Biol. 20, 257.
- Wolfel ¨, S., Speck, S., Essbauer, S., Thoma, B.R., Mertens, M., Werdermann, S., Niederstrasser, O., Petri, E., Ulrich, R.G., W¨olfel, R., Dobler, G., 2017. High seroprevalence for indigenous spotted fever group rickettsiae in forestry workers from the federal state of Brandenburg, Eastern Germany. Ticks Tick Borne Dis. 8, 132-138.