Published August 8, 2024
| Version 1
Technical note
Open
PTMVision: An Interactive Visualization Webserver for Post-Translational Modifications of Proteins
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1.
VIB-UGent Center for Medical Biotechnology
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2.
Ghent University
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3.
University of Tübingen
Description
Source code and usecase files for PTMVision.
Files
PTMVision-main.zip
Files
(51.4 MB)
| Name | Size | Download all |
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md5:35246d310cb9378ea0c5c8789871b87d
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29.9 MB | Preview Download |
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md5:fbf0065ccc358a6c39f79ecda7f846bb
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21.6 MB | Preview Download |
Additional details
Funding
- Deutsche Forschungsgemeinschaft
- Cellular Mechanisms of Antibiotic Action and Production TRR261
- Deutsche Forschungsgemeinschaft
- Cluster of 16 Excellence EXC 2124 ‘Controlling Microbes to Fight Infections 390838134
- Deutsche Forschungsgemeinschaft
- Cluster of Excellence EXC 2064/1 ‘Machine Learning: New Perspectives for Science 390727645
- Research Foundation - Flanders
- G010023N, G028821
- European Commission
- Horizon Europe Programme 101080544
- Ghent University
- Concerted Research Actio BOF21/GOA/033
Software
- Repository URL
- https://github.com/Integrative-Transcriptomics/PTMVision
- Programming language
- Python, JavaScript, HTML, CSS
- Development Status
- Active
References
- Ressa, A.; Bosdriesz, E.; De Ligt, J.; Mainardi, S.; Maddalo, G.; Prahallad, A.; Jager, M.; De La Fonteijne, L.; Fitzpatrick, M.; Groten, S.; others, A system-wide approach to monitor responses to synergistic BRAF and EGFR inhibition in colorectal cancer cells. Molecular & Cellular Proteomics 2018, 17, 1892–1908.
- Schmidt, A.; Kochanowski, K.; Vedelaar, S.; Ahrné, E.; Volkmer, B.; Callipo, L.; Knoops, K.; Bauer, M.; Aebersold, R.; Heinemann, M. The quantitative and condition-dependent Escherichia coli proteome. Nature biotechnology 2016, 34, 104–110.