Published August 8, 2024
| Version v1
Dataset
Open
TRcompDB v1.0, a global reference of tandem repeat variation
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1.
University of Southern California
Description
The v-2.1 "vamos" motif sets and the TR annotations using 360 publicly available long-read assemblies (TRCompDB).Data are provided for both GRCh38 and T2T-CHRM13 reference genomes. TR annotations are provided as combined vcf file. “oriMotifs” stands for the full motif set before efficient motif selection. “effMotifs-0.x” stands for the efficient motifs selected under q=0.x.
Files
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(1.1 GB)
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md5:b36925f57225a94f5fe916099ee583b0
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207.6 MB | Download |
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md5:41afa6017a9dd97347b801044fba27a2
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34.6 MB | Download |
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32.2 MB | Download |
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md5:0e68c23a515be4ad612e7d9f8972f3b3
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30.8 MB | Download |
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md5:d90b64d2c86d5630261e17be9d016744
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28.7 MB | Download |
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27.5 MB | Download |
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md5:de0a1dae77a65b928af1944dae423973
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25.6 MB | Download |
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md5:a01bbb2877929e52a26159e66576869d
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42.1 MB | Download |
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md5:fb16ae57c528bfc0496650690616c38e
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39.1 MB | Download |
Additional details
Funding
- National Human Genome Research Institute
- Computational methods for detecting and genotyping human genetic variation using single-molecule sequencing and high-throughput short read data R01HG010756