Biodiversity Literature Repository

Submit to community
Liberated Data
Published October 6, 2017 | Version v1
Journal article Open

A comprehensive phylogenetic analysis of Grapsoidea crabs (Decapoda: Brachyura) based on mitochondrial cytochrome oxidase subunit 1 (CO1) genes

Description

Xin, Zhaozhe, Liu, Yu, Tang, Boping, Zhou, Chunlin, Liu, Qiuning (2018): A comprehensive phylogenetic analysis of Grapsoidea crabs (Decapoda: Brachyura) based on mitochondrial cytochrome oxidase subunit 1 (CO1) genes. Turkish Journal of Zoology 42: 46-52, DOI: 10.3906/zoo-1703-46, URL: http://dx.doi.org/10.3906/zoo-1703-46

Files

source.pdf

Files (6.2 MB)

Name Size Download all
md5:9d020e5a9f808de4e317ea0d6a3b8001
6.2 MB Preview Download

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:9D020E5AFF80FFE4E317EA0D6A3B8001

Related works

Has part
Figure: 10.5281/zenodo.13228447 (DOI)
Figure: 10.5281/zenodo.13228449 (DOI)
Figure: 10.5281/zenodo.13228451 (DOI)
Figure: 10.5281/zenodo.13228453 (DOI)
Figure: 10.5281/zenodo.13228455 (DOI)

References

  • Chu KH, Ho HY, Li CP, Chan TY (2003). Molecular phylogenetics of the mitten crab species in Eriocheir, sensu lato (Brachyura: Grapsidae). J Crustacean Biol 23: 738- 746.
  • Cuesta JA, Schubart CD (1999). First zoeal stages of Geograpsus lividus and Goniopsis pulchra from Panama confirm consistent larval characters for the subfamily Grapsinae (Crustacea: Brachyura: Grapsidae). Ophelia 51: 163-176.
  • Cui BK, Tang LP, Dai YC (2011). Morphological and molecular evidences for a new species of Lignosus (Polyporales, Basidiomycota) from tropical China. Mycol Prog 10: 267-271.
  • De Grave S, Pentcheff ND, Ahyong ST, Chan TY, Crandall KA, Dworschak PC, Felder DL, Feldmann RM, Fransen CHJM, Goulding LYD et al. (2009). A classification of living and fossil genera of decapod crustaceans. Raffles B Zool 21: 1-109.
  • Guinot D (1978). Principes d'une classification evolutive des Crustaces Decapodes Brachyoures. Bulletin Biologique de la France et de la Belgique 112: 211-292.
  • Ji YK, Wang A, Lu XL, Song DH, Jin YH, Lu JJ, Sun HY (2014). Mitochondrial genomes of two brachyuran crabs (Crustacea: Decapoda) and phylogenetic analysis. J Crustacean Biol 34: 494-503.
  • Karasawa H, Kato H (2001). The systematic status of the genus Miosesarma Karasawa, 1989 with a phylogenetic analysis within the family Grapsidae and a review of fossil records (Crustacea: Decapoda: Brachyura). Paleontol Res 5: 259-275.
  • Katoh K, Misawa K, Kuma K, Miyata T (2002). MAFFT a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30: 3059-3066.
  • Katoh K, Standley DM (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30: 772-780.
  • Liu QN, Zhang HB, Jiang SH, Xuan FJ, Li CF, Zhang DZ, Zhou CL, Tang BP (2015). The complete mitochondrial genome of Eriocheir japonica sinensis (Decapoda Varunidae) and its phylogenetic analysis. Biochem Syst Ecol 62: 241- 248.
  • Ma HY, Ma CY, Li CH, Lu JX, Zou X, Gong YY, Wang W, Chen W, Ma LB, Xia LJ (2015). First mitochondrial genome for the red crab (Charybdis feriata) with implication of phylogenomics and population genetics. Sci Rep 5: 11524.
  • McDermott JJ (1998). The western Pacific brachyuran Hemigrapsus sanguineus (Grapsidae) in its new habitat along the Atlantic coast of the United States reproduction. J Crustacean Biol 18: 308-316.
  • Moritz C, Dowling TE, Brown WM (1987). Evolution of animal mitochondrial DNA relevance for population biology and systematics. Annu Rev Ecol Syst 18: 269- 292.
  • Ng NK, Davie PJF, Schubart CD (2007). Xenograpsidae, a new family of crabs (Crustacea: Brachyura) associated with shallow water hydrothermal vents. Raffles B Zool Supplement 16: 233- 256.
  • Ng PKL, Guinot D, Davie PJF (2008). Systema Brachyurorum
  • Niem VH (1993). Phylogenetic and systematic position of Sesarma rubripes Rathbun, 1897 (Brachyura: Grapsidae). Zool Med Leiden 67: 185-195.
  • Pereyra Lago R (1993). The zoeal development of Sesarma eulimene de Man (Decapoda, Brachyura, Grapsidae), and identification of larvae of the genus Sesarma in South African waters. S Afr J Zool 28: 173-181.
  • Ronquist F, Huelsenbeck JP, Teslenko M (2011). Draft MrBayes version 3.2 Manual. Tutorials and Model Summaries.
  • Schubart CD, Cannicci S, Vannini M, Fratini S (2006). Molecular phylogeny of grapsoid crabs (Decapoda, Brachyura) and allies based on two mitochondrial genes and a proposal for refraining from current superfamily classification. J Zool Syst Evol Res 44: 193-199.
  • Schubart CD, Cuesta JA (1998). First zoeal stages of four Sesarma species from Panama, with identification keys and remarks on the American Sesarminae (Crustacea: Brachyura: Grapsidae). J Plankton Res 20: 61-84.
  • Schubart CD, Diesel R, Hedges SB (1998). Rapid evolution to terrestrial life in Jamaican crabs. Nature 393: 363-365.
  • Schubart CD, Neigel JE, Felder DL (2000). Use of the mitochondrial 16S rRNA gene for phylogenetic and population studies of Crustacea. Crustacean Issues 12: 817-830.
  • Silvestro D, Michalak I (2012). raxmlGUI a graphical front-end for RAxML. Org Divers Evol 12: 335-337.
  • Tang BP, Xin ZZ, Liu Y, Zhang DZ, Wang ZF, Zhang HB, Chai XY, Zhou CL, Liu QN (2017). The complete mitochondrial genome of Sesarmops sinensis reveals gene rearrangements and phylogenetic relationships in Brachyura. PLOS ONE 12: e0179800.
  • Tang BP, Zhou KY, Song DX, Yang G, Dai AY (2003). Molecular systematics of the Asian mitten crabs, genus Eriocheir (Crustacea; Brachyura). Mol Phylogenet Evol 29: 309- 316.
  • Von Hagen HO (1978). The systematic position of Sesarma (Sesarma) rectum Randall and a new definition of the subgenus Sesarma (Brachyura, Grapsidae). Crustaceana 34: 4-54.
  • Wang CH, Li CH, Li SF (2008). Mitochondrial DNA-inferred population structure and demographic history of the mitten crab (Eriocheir sensu stricto) found along the coast of mainland China. Mol Ecol 17: 3515-3527.
  • Xia X, Xie Z (2001). DAMBE software package for data analysis in molecular biology and evolution. J Hered 92: 371-373.
  • Xin ZZ, Liu Y, Zhang DZ, Chai XY, Wang ZF, Zhang HB, Zhou CL, Tang BP, Liu QN (2017a). Complete mitochondrial genome of Clistocoeloma sinensis (Brachyura: Grapsoidea): gene rearrangements and higher-level phylogeny of the Brachyura. Sci Rep 7: 4128.
  • Xin ZZ, Liu Y, Zhang HB, Zhang DZ, Zhou CL, Tang BP, Liu QN (2017b). Mitochondrial genome of Helice tientsinensis (Brachyura: Grapsoidea: Varunidae): gene rearrangements and higher-level phylogeny of the Brachyura. Gene 627: 307-314.
  • Zhao CL, Cui BK (2012). A new species of Perenniporia (Polyporales, Basidiomycota) described from southern China based on morphological and molecular characters. Mycol Prog 11: 555- 560.