Published July 29, 2024 | Version v1
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Resolving the conflictive phylogenetic relationships of Oceanites (Oceanitidae: Procellariiformes) with the description of a new species

  • 1. Centro Bahía Lomas, Facultad de Ciencias, Universidad Santo Tomás, Chile & Red de Observadores de Aves y Vida Silvestre de Chile, Santiago, Chile
  • 2. Red de Observadores de Aves y Vida Silvestre de Chile, Santiago, Chile
  • 3. Red de Observadores de Aves y Vida Silvestre de Chile, Santiago, Chile & Oikonos Ecosystem Knowledge. P.O. Box 1918, Kailua HI 96734, USA
  • 4. Northern New Zealand Seabird Trust, 174 Ti Point Road, RD5, Warkworth, 0985, New Zealand
  • 5. Department of Zoology, University of Otago, Dunedin, New Zealand
  • 6. Centro Bahía Lomas, Facultad de Ciencias, Universidad Santo Tomás, Chile & Departamento de Zoología, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Chile & Centro Bahía Lomas, Facultad de Ciencias, Universidad Santo Tomás, Chile & Universidad Católica de Santa María, Arequipa, Perú & Centro Bahía Lomas, Facultad de Ciencias, Universidad Santo Tomás, Chile

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Norambuena, Heraldo V., Barros, Rodrigo, Jaramillo, Álvaro, Medrano, Fernando, Gaskin, Chris, King, Tania, Baird, Karen, Hernández, Cristián E. (2024): Resolving the conflictive phylogenetic relationships of Oceanites (Oceanitidae: Procellariiformes) with the description of a new species. Zootaxa 5486 (4): 451-475, DOI: 10.11646/zootaxa.5486.4.1, URL: http://dx.doi.org/10.11646/zootaxa.5486.4.1

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References

  • Barros, R. (2017) ?Por que aparecen golondrinas de mar en la cordillera de Chile central? La Chiricoca, 22, 4-18.
  • Barros, R., Medrano, F., Silva, R., Schmitt, F., Manilarich, V., Teran, D., Peredo, R., Pinto, C., Vallverdu, A., Fuchs, J. & Norambuena, H.V. (2020) Breeding sites, distribution and conservation status of the White-vented Storm-petrel (Oceanites gracilis) in the Atacama Desert. Ardea, 108 (2), 203-212. https://doi.org/10.5253/arde.v108i2.a7
  • Beck, J.R. & Brown, D.W. (1972) The biology of Wilson's Storm Petrel, Oceanites oceanicus (Kuhl), at Signy Island, South Orkney Islands. British Antarctic Survey Scientific Report, 69, 1-54.
  • Bourne, W.R.P. (1964a) On the occurrence and nomenclature of certain petrels in North America. Bulletin of the British Ornithologists' Club, 84, 114-116.
  • Bourne, W.R.P. (1964b) Observations of sea-birds. Sea Swallow, 16, 9-40.
  • Budaev, S.V. (2010). Using principal components and factor analysis in animal behaviour research: caveats and guidelines. Ethology, 116 (5), 472-480. https://doi.org/10.1111/j.1439-0310.2010.01758.x
  • Burnham, K.P. & Anderson, D.R. (2002) Model Selection and Inference: A Practical Information-Theoretic Approach. SpringerVerlag, New York, New York, 514 pp.
  • Cibois, A., Thibault, J.-C., LeCroy, M. & Bretagnolle, V. (2015) Molecular analysis of a storm petrel specimen from the Marquesas Islands, with comments on specimens of Fregetta lineata and F. guttata. Bulletin of the British Ornithologists' Club, 135, 240-246.
  • Clements, J.F., Rasmussen, P.C., Schulenberg, T.S., Iliff, M.J., Fredericks, T.A., Gerbracht, J.A., Lepage, D., Spencer, A., Billerman, S.M., Sullivan, B.L. & Wood, C.L. (2023) The eBird/Clements Checklist of Birds of the World. Version 2023. Available from: https://www.birds.cornell.edu/clementschecklist/download/ (accessed 24 June 2024)
  • Cracraft, J. (1985) Historical biogeography and patterns of differentiation within the South American avifauna: Areas of endemism. Ornithological Monographs, 36, 49-84. https://doi.org/10.2307/40168278
  • Costello, M.J., Tsai, P., Wong, P.S., Cheung, A., Basher, Z. & Chaudhary, C. (2017) Marine biogeographic realms and species endemicity. Nature Communications, 8, 1057. https://doi.org/10.1038/s41467-017-01121-2
  • Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9 (8), 772. https://doi.org/10.1038/nmeth.2109
  • Dickinson, E.C. & Christidis, L. (2015) The Howard and Moore Complete Checklist of the Birds of the World. Vol. 1. A & C Black, London, 461 pp.
  • De Queiroz, K. (1998) The general lineage concept of species, species criteria, and the process of speciation: A conceptual unification and terminological recommendations. In: Howard, D.J. & Berlocher, S.H. (Eds.), Endless Forms: Species and Speciation. Oxford University Press, New York, New York, pp. 57-75.
  • De Queiroz, K. (1999) The general lineage concept of species and the defining properties of the species category. In: Wilson, R.A. (Ed.), Species: New interdisciplinary essays. MIT Press, Cambridge, Massachusetts, pp. 49-89. https://doi.org/10.7551/mitpress/6396.003.0007
  • De Queiroz, K. (2007) Species concepts and species delimitation. Systematic Biology, 56 (6), 879-886. https://doi.org/10.1080/10635150701701083
  • Drucker, J., Carboneras, C., Jutglar, F. & Kirwan, G.M. (2020) Wilson's Storm-Petrel (Oceanites oceanicus). Version 1.0. In: Billerman, S.M. (Ed.), Birds of the World. Cornell Lab of Ornithology, Ithaca, New York. https://doi.org/10.2173/bow.wispet.01
  • Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29 (8), 1969-1973. https://doi.org/10.1093/molbev/mss075
  • Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32 (5), 1792-1797. https://doi.org/10.1093/nar/gkh340
  • Elliot, D.G. (1859) Descriptions of six new species of birds. Ibis, 1 (4), 391-395. https://doi.org/10.1111/j.1474-919X.1859.tb06218.x
  • Falla, R.A. (1937) B.A.N.Z Antarctic Research expedition 1929-1931. Reports-Series B, Vol. II. Birds. B.A.N.Z.A.R. Expedition Committee, Adelaide, 228 pp.
  • Fetzner Jr., J.W. (1999) Extracting high-quality DNA from shed reptile skins: a simplified method. Biotechniques, 26 (6), 1052-1054. https://doi.org/10.2144/99266bm09
  • Forbes, W.A. (1882) Report on the anatomy of the petrels (Tubinares), collected during the voyage of H.M.S. Challenger. Report on the Scientific Results of the Voyage of H.M.S. Challenger during the years 1873-76. Zoology 4. Neill & Co., Edinburgh, 64 pp. https://doi.org/10.5962/bhl.title.13863
  • Gould, J. (1841) Thalassidroma nereis. Proceedings of the Zoological Society of London, 8 (95), 178.
  • Gould, J. (1844) On the family Procellaridae, with descriptions of ten new species. Annals and Magazine of Natural History, 13, 360-368. https://doi.org/10.1080/03745484409442618
  • Hackett, S.J., Kimball, R.T., Reddy, S., Bowie, R.C.K., Braun, E.L., Braun, M.J., Chojnowski, J.L., Cox, W.A., Han, K., Harshman, J., Huddleston, C.J., et al. (2008) A phylogenomic study of birds reveals their evolutionary history. Science, 320, 1763-1768. https://doi.org/10.1126/science.1157704
  • Harrison, P., Sallaberry, M., Gaskin, C.P., Baird, K.A., Jaramillo, A., Metz, S.M., Pearman, M., O'Keeffe, M., Dowdall, J., Enright, S., Fahy, K., Gilligan, J. & Lillie, G. (2013) A new storm-petrel species from Chile. Auk, 130 (1), 180-191. https://doi.org/10.1525/auk.2012.12071
  • Howell, S.N.G. & Schmitt, F. (2016) Pincoya Storm Petrel: comments on identification and plumage variation. Dutch Birding, 38 (6), 384-388.
  • Howell, S.N. & Zufelt, K. (2019) Oceanic Birds of the World: a Photo Guide. Princeton University Press, Princeton, New Jersey, 360 pp. https://doi.org/10.1515/9780691197012
  • International Commission on Zoological Nomenclature (1999) International Code of Zoological Nomenclature. Fourth edition. International Trust for Zoological Nomenclature, London, 336 pp.
  • Kuhl, H. (1820) Beitrage zur zoologie vergleichenden anatomie. Verlag der Hermannschen Buchhandlung, Frankfurt, 384 pp.
  • Kennedy, M. & Page, R.D. (2002) Seabird supertrees: combining partial estimates of procellariiform phylogeny. Auk, 119 (1), 88-108. https://doi.org/10.1093/auk/119.1.88
  • Landis, M.J., Matzke, N.J., Moore, B.R. & Huelsenbeck, J.P. (2013) Bayesian analysis of biogeography when the number of areas is large. Systematic Biology, 62, 789-804. https://doi.org/10.1093/sysbio/syt040
  • Latham, J. (1790) Index Ornithologicus, Sive Systema Ornithologiae: Complectens Avium Divisionem in Classes, Ordines, Genera, Species, Ipsarumque Varietates. Leigh & Sotheby, London, 488 pp. https://doi.org/10.5962/bhl.title.131313
  • Lowe, P.R. (1921) Description of a new petrel (Oceanites gracilis galapagoensis) from Charles I., Galapagos. Bulletin of the British Ornithologists' Club, 46, 6.
  • Nunn, G.B. & Stanley, S.E. (1998) Body size effects and rates of cytochrome b evolution in tube-nosed seabirds. Molecular Biology and Evolution, 15, 1360-1371. https://doi.org/10.1093/oxfordjournals.molbev.a025864
  • Mathews, G.M. (1912) The Birds of Australia. Vol. II. Witherby & Co., London, 236 pp.
  • Mathews, G.M. (1934) A check-list of the Order Procellariiformes. Novitates Zoologicae 39, 151-206.
  • Matzke, N.J. (2012) Founder-event speciation in BioGeoBears package dramatically improves likelihoods and alters parameter inference in dispersal-extinction-cladogenesis DEC analyses. Frontiers of Biogeography, 4, 210.
  • Medrano, F., Carboneras, C., Jutglar, F., Kirwan, G.M. & Sharpe, C.J. (2021) Elliot's Storm-Petrel (Oceanites gracilis), version 2.0. In: Schulenberg, T.S. & Keeney, B.K. (Eds.), Birds of the World. Cornell Lab of Ornithology, Ithaca, New York. https://doi.org/10.2173/bow.wvspet1.02
  • Moodley, Y., Masello, J.F., Cole, T.L., Calderon, L., Munimanda, G.K., Thali, M.R. & Quillfeldt, P. (2015) Evolutionary factors affecting the cross-species utility of newly developed microsatellite markers in seabirds. Molecular Ecology Resources, 15 (5), 1046-1058. https://doi.org/10.1111/1755-0998.12372
  • Murphy, R.C. & Beck, R.H. (1918) A study of the Atlantic Oceanites. Bulletin of the American Museum of Natural History, 38 (4), 117-146.
  • Murphy, R.C. (1936) Oceanic Birds of South America. Vol. II. American Museum of Natural History, New York, New York, 1245 pp.
  • Onley, D. & Scofield, P. (2007) Albatrosses, Petrels and Shearwaters of the World. Christopher Helm, London, 240 pp.
  • Pacha, A.S., Pande, A., Arya, S., Saini, S., Sivakumar, K. & Mondol, S. (2023) New insights on the phylogeny and genetic status of a highly vagile seabird from East Antarctica. Polar Science, 38, 100972. https://doi.org/10.1016/j.polar.2023.100972
  • Palma, R.L, Gaskin, C.P. & Jaramillo, A. (2012a) The scientific name, author, and date for the "Fuegian storm-petrel", a subspecies of Oceanites oceanicus from southern South America. Notornis, 59, 74-78.
  • Palma, R.L, Gaskin, C.P. & Jaramillo, A. (2012b) A correction to Palma et al. (2012) on the nomenclature of the Fuegian storm-petrel, Oceanites oceanicus chilensis. Notornis, 59, 187-188.
  • Pearman, M. (2000) Primeros registros del Paino de Elliot (Oceanites gracilis) en la Argentina. Hornero, 15, 141-143. https://doi.org/10.56178/eh.v15i2.935
  • Pett, M.A., Lackey, N.R. & Sullivan, J.J. (2003) Making Sense of Factor Analysis: the Use of Factor Analysis for Instrument Development in Health Care Research. SAGE Publications, Thousand Oaks, California, 368 pp. https://doi.org/10.4135/9781412984898
  • Prum, R.O., Berv, J.S., Dornburg, A., Field, D.J., Townsend, J.P., Lemmon, E.M. & Lemmon, A.R. (2015) A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing. Nature, 526, 569-573. https://doi.org/10.1038/nature15697
  • Rambaut, A. & Drummond, A.J. (2009) Tracer. Version 1.5. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 4 July 2019)
  • Reddy, S., Kimball, R.T., Pandey, A., Hosner, P.A., Braun, M.J., Hackett, S.J., Han, K., Harshman, J., Huddleston, C.J., Kingston, S., Marks, B.D., Miglia, K.J., Moore, W.S., Sheldon, F.H., Witt, C.C., Yuri, T. & Braun, E.L. (2017) Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling. Systematic Biology, 66, 857-879. https://doi.org/10.1093/sysbio/syx041
  • Ree, R.H. & Smith, S.A. (2008) Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Systematic Biology, 57, 4-14. https://doi.org/10.1080/10635150701883881
  • Remsen Jr., J.V., Areta, J.I., Bonaccorso, E., Claramunt, S., Del-Rio, G., Jaramillo, A., Lane, D.F., Robbins, M.B., Stiles, F.G. & Zimmer, K.J. (2023) A Classification of the Bird Species of South America. American Ornithological Society. Available from: http://www.museum.lsu.edu/~Remsen/SACCBaseline.htm (accessed 24 June 2024)
  • Roberts, B. (1940) The life cycle of Wilson's Petrel. British Graham Land Expedition Scientific Reports, 1 (2), 141-194.
  • Robertson, B.C., Stephenson, B.M. & Goldstein, S.J. (2011) When rediscovery is not enough: taxonomic uncertainty hinders conservation of a critically endangered bird. Molecular Phylogenetics and Evolution, 61, 949-952. https://doi.org/10.1016/j.ympev.2011.08.001
  • Robertson, B.C., Stephenson, B.M., Ronconi, R.A., Goldstien, S.J., Shepherd, L., Tennyson, A., Carlile, N. & Ryan, P.G. (2016) Phylogenetic affinities of the Fregetta storm-petrels are not black and white. Molecular Phylogenetics and Evolution, 97, 170-176. https://doi.org/10.1016/j.ympev.2016.01.004
  • Ronquist, F. (1997) Dispersal-vicariance analysis, a new approach to the quantification of historical biogeography. Systematic Biology, 46, 195-203. https://doi.org/10.1093/sysbio/46.1.195
  • Sausner, J., Torres-Mura, J.C., Robertson, J. & Hertel, F. (2016) Ecomorphological differences in foraging and pattering behavior among storm-petrels in the eastern Pacific Ocean. Auk, 133, 397-414. https://doi.org/10.1642/AUK-15-158.1
  • Sheard, K. (1943) Synonyms, homonyms and nomina nuda. Emu, 42, 177-180. https://doi.org/10.1071/MU942177
  • Sibley, C.G., Comstock, J.A. & Ahlquist, J.E. (1990) DNA hybridization evidence of hominoid phylogeny: a reanalysis of the data. Journal of Molecular Evolution, 30, 202-236. https://doi.org/10.1007/BF02099992
  • Smithe, F.B. (1975) Naturalist's Color Guide. American Museum of Natural History, New York, New York, 229 pp.
  • Spear, L.B. & Ainley, D.G. (2007) Storm-petrels of the Eastern Pacific Ocean: Species assembly and diversity along marine habitat gradients. Ornithological Monographs, 62, 1-77. https://doi.org/10.1642/0078-6594(2007)62[1:SOTEPO]2.0.CO;2
  • Sorenson, M.D., Ast, J.C., Dimcheff, D.E., Yuri, T. & Mindell, D.P. (1999) Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Molecular Phylogenetics and Evolution, 12 (2), 105-114. https://doi.org/10.1006/mpev.1998.0602
  • Tamura, K., Stecher, G. & Kumar, S. (2021) MEGA11: molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution, 38 (7), 3022-3027. https://doi.org/10.1093/molbev/msab120
  • Taylor, R.S., Bolton, M., Beard, A., Birt, T., Deane-Coe, P., Raine, A.F., Gonzalez-Solis, J., Lougheed, S.C. & Friesen, V.L. (2019) Cryptic species and independent origins of allochronic populations within a seabird species complex (Hydrobates spp.). Molecular Phylogenetics and Evolution, 139, 106552. https://doi.org/10.1016/j.ympev.2019.106552
  • Techow, N.M., Ryan, P.G. & O'Ryan, C. (2009) Phylogeography and taxonomy of White-chinned and Spectacled Petrels. Molecular Phylogenetics and Evolution, 52 (1), 25-33. https://doi.org/10.1016/j.ympev.2009.04.004
  • Torres, C.R., Ogawa, L.M., Gillingham, M.A., Ferrari, B. & van Tuinen, M. (2014) A multi-locus inference of the evolutionary diversification of extant flamingos (Phoenicopteridae). BMC Evolutionary Biology, 14, 1-10. https://doi.org/10.1186/1471-2148-14-36
  • Vieillot, L.J.P. (1818) Nouveau Dictionnaire d'Histoire Naturelle. Vol. 19. Nouvelle Edition. Deterville, Paris, 619 pp.
  • Wallace, S.J., Morris-Pocock, J.A., Gonzalez-Solis, J., Quillfeldt, P. & Friesen, V.L. (2017) A phylogenetic test of sympatric speciation in the Hydrobatinae (Aves: Procellariiformes). Molecular Phylogenetics and Evolution, 107, 39-47. https://doi.org/10.1016/j.ympev.2016.09.025
  • Wiens, J.J. (2006) Missing data and the design of phylogenetic analyses. Journal of Biomedical Informatics, 39 (1), 34-42. https://doi.org/10.1016/j.jbi.2005.04.001
  • Winkler, D.W., Billerman, S.M. & Lovette, I.J. (2020) Southern Storm-Petrels (Oceanitidae). Version 1.0. In: Billerman, S.M., Keeney, B.K., Rodewald, P.G. & Schulenberg, T.S. (Eds.), Birds of the World. Cornell Lab of Ornithology, Ithaca, New York. https://doi.org/10.2173/bow.oceani2.01
  • Xia, X. (2018) DAMBE7: New and improved tools for data analysis in molecular biology and evolution. Molecular Biology and Evolution, 35 (6), 1550-1552. https://doi.org/10.1093/molbev/msy073
  • Xia, X., Xie, Z., Salemi, M., Chen, L. & Wang, Y. (2003) An index of substitution saturation and its application. Molecular Phylogenetics and Evolution, 26 (1), 1-7. https://doi.org/10.1016/S1055-7903(02)00326-3