Published December 31, 2013 | Version v1
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Paramecium tredecaurelia: A Unique Non-Polymorphic Species of the P. aurelia spp. Complex (Oligohymenophorea, Ciliophora)

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Przyboś, Ewa, Tarcz, Sebastian, Surmacz, Marta, Sawka, Natalia, Fokin, Sergei I. (2013): Paramecium tredecaurelia: A Unique Non-Polymorphic Species of the P. aurelia spp. Complex (Oligohymenophorea, Ciliophora). Acta Protozoologica 52 (4): 257-266, DOI: 10.4467/16890027AP.13.022.1314, URL: https://www.mendeley.com/catalogue/506d73cb-f17b-34fc-bf1b-d684d1b6f5ea/

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Publication: 10.1016/j.ejop.2012.11.001 (DOI)
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References

  • Allen S. L., Farrow S. W., Golembiewski P. A. (1973) Esterase vari- ations between the 14 syngens of Paramecium aurelia under exenic growth. Genetics 73: 561-573
  • Aufderheide K. J., Daggett P.-M., Nerad T. A. (1983) Paramecium sonneborni n. sp., a new member of the Paramecium aurelia species complex. J. Protozool. 30: 128-131
  • Barth D., Krenek S., Fokin S. I., Berendonk T. U. (2006) Intraspecific genetic variation in Paramecium revealed by mitochondrial cytochrome c oxidase I sequences. J. Eukaryot. Microbiol. 53: 20-25
  • Barth D., Przybos E., Fokin S. I., Schlegel M., Berendonk T. U. (2008) Cytochrome b sequence data suggest rapid speciation within the Paramecium aurelia species complex. Mol. Phylogenet. Evol. 49: 669-673
  • Bass D., Boenigk J. (2011) Everything is everywhere: a twenty-first century de-/reconstruction with respect to protists. In: Bioge- ography of Microscopic Organisms: Is Everything Small Everywhere? (Ed. D. Fontaneto). The Systematics Association, Cambridge University Press, New York, 88-110
  • Boenigk J., Ereshefsky M., Hoef-Emden K., Mallet J., Bass D. (2012) Concepts in protistology: species definitions and boundaries. Eur. J. Protistol. 48: 96-102
  • Bull J. J, Huelsenbeck J. P, Cunningham C. W, Swofford D. L, Wad- dell P. J. (1993) Partitioning and combining data in phylogenetic analysis. Syst. Biol. 42: 384-397
  • Catania F., Wurmser F., Potekhin A. A., Przybos E., Lynch M. (2009) Genetic diversity in the Paramecium aurelia species complex. Mol. Biol. Evol. 26: 421-431
  • Chen T. T. (1956) Varieties and mating types in Paramecium bursaria. II. Variety and mating types found in China. J. Exp. Zool. 132: 255-268
  • Duff R. J., Ball H., Lavrentyev P. J. (2008) Application of combined morphological-molecular approaches to the identification of planktonic protists from environmental samples. J. Eukaryot. Microbiol. 55: 306-312
  • Felsenstein J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17: 368-376
  • Felsenstein J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791
  • Foissner W., Chao A., Katz L. A. (2008) Diversity and geographic distribution of ciliates (Protista: Ciliophora). Biodiversity Conserv. 17: 345-363
  • Greczek-Stachura M., Potekhin A., Przybos E., Rautian M., Skoblo I., Tarcz S. (2012) Identification of Paramecium bursaria syngens through molecular markers - comparative analysis of three loci in the nuclear and mitochndrial DNA. Protist 163: 671-685
  • Hall T. A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41: 95-98
  • Hori M., Tomikawa I., Przybos E., Fujishima M. (2006) Comparison of the evolutionary distances among syngens and sibling species of Paramecium. Mol. Phylogenet. Evol. 38: 697-704
  • Kreutz M., Stoeck T., Foissner W. (2012) Morphological and molecular characterization of Paramecium (Viridoparamecium nov. subgen.) chlorelligerum Kahl 1935 (Ciliophora). J. Eukaryot. Microbiol. 59: 548-563
  • Logares R., Rengefors K., Kremp A., Shalchian-Tabrizi K., Boltovskoy A., Tengs T., Shurtleff A., Klaveness D. (2007) Phe- notypically different microalgal morphospecies with identical ribosomal DNA: a case of rapid adaptive evolution? Microb. Ecol. 53: 549-561
  • Nei M., Kumar S. (2000) Molecular Evolution and Phylogenetics. Oxford University Press, New York.
  • Page R. D. M. (1996) TreeView: An application to display phylogenetic tress on personal computers. Bioinformatics 12: 357-358
  • Przybos E., Barth D., Berendonk T. U. (2010) Paramecium sexaurelia - intra-specific polymorphism and relationships with other Paramecium aurelia spp., revealed by cytochrome b sequence data. Folia biol. (Krakow) 58: 55-60
  • Przybos E., Hori M., Fokin S. I. (2003) Strains of Paramecium quadecaurelia from Namibia, Africa; genetic and molecular studies. Acta Protozool. 42: 357-360
  • Przybos E., Maciejewska A., Skotarczak B. (2006) Relationships of species of the Paramecium aurelia complex (Protozoa, Ph. Ciliophora, Cl. Oligohymenophorea) based on sequences of the histone H4 gene fragment. Folia biol. (Krakow) 54: 37-42
  • Przybos E., Nevo E., Pavlicek T. (2002) Paramecium tredecaurelia of the Paramecium aurelia complex in Israel. Folia biol. (Krakow) 50: 221-222
  • Przybos E., Prajer M., Greczek-Stachura M., Skotarczak B., Maciejewska A., Tarcz S. (2007) Genetic analysis of the Paramecium aurelia complex by classical and mlecular methods. Syst. Biodivers. 5: 417-434
  • Przybos E., Tarcz S., Dusi E. (2013) New Paramecium quadecaurelia strains (P. aurelia spp. complex, Ciliophora) identified by molecular markers (rDNA and mtDNA). Eur. J. Protistol. 10.1016/j.ejop.2012.11.001
  • Przybos E., Tarcz S., Greczek-Stachura M., Surmacz M. (2011) Polymorphism of Paramecium pentaurelia (Ciliophora, Oligohymenophorea) strains revealed by rDNA and mtDNA sequences. Eur. J. Protistol. 47: 138-143
  • Przybos E., Tarcz S., Potekhin A., Rautian M., Prajer M. (2012a) A two-locus molecular characterization of Paramecium calkinsi. Protist 163: 263-273.
  • Przybos E., Tarcz S., Prajer M., Surmacz M., Rautian M., Sawka N. (2012b) Does high intraspecific variability of two genome fragments indicate a recent speciation process of Paramecium dodecaurelia (P. aurelia species complex, Ciliophora, Protozoa)? Syst. Biodivers. 10: 289-304
  • Przybos E., Tarcz S., Schmidt H., Czubatinski L. (2009) First stand of Paramecium octaurelia in Europe and molecular characteristics of other known strains of this species. Folia biol. (Krakow) 57: 65-70
  • Rafalko M., Sonneborn T. M. (1959) A new syngen (13) of Paramecium aurelia consisting of stocks from Mexico, France and Madagascar. J. Protozool. 6 (suppl.): 30
  • Ronquist F., Huelsenbeck J. P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574
  • Saitou N., Nei M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425
  • Schlegel M., Meisterfeld R. (2003) The species problem in protozoa revisited. Eur. J. Protistol. 39: 349-355
  • Snoeyenbos-West O. L., Salcedo T., McManus G. B., Katz L. A. (2002) Insights into the diversity of choreotrich and oligotrich ciliates (Class: Spirotrichea) based on genealogical analyses of multiple loci. Int. J. Syt. Evol. Microbiol. 52: 1901-1913
  • Sonneborn T. M. (1950) Methods in the general biology and genetics of Paramecium aurelia. J. Exp. Zool. 113: 87-147
  • Sonneborn T. M. (1970) Methods in Paramecium research. In: Methods in Cell Physiology, vol. 4, (Ed. D. M. Prescott). Academic Press, New York, London, 241-339
  • Sonneborn T. M. (1974) Paramecium aurelia. In: Handbook of Genetics, vol. 2, (Ed. R. C. King). Plenum Press, New York, 469-594
  • Sonneborn T. M. (1975) The Paramecium aurelia complex of fourteen sibling species. Trans. Amer. Micros. Soc. 94: 155-178
  • Stoeck T., Przybos E., Schmidt H. J. (1998) Combination of genetics with inter- and intra-strain crosses and RAPD-fingerprints reveals different population structures within the Paramecium aurelia species complex. Eur. J. Protistol. 34: 348-355
  • Stoeck T., Przybos E., Kusch J., Schmidt H. J. (2000) Intra-species differentiation and level of inbreeding of different sibling species of the Paramecium aurelia complex. Acta Protozool. 39: 15-22
  • Struder-Kypke M. C., Lynn D. L. (2010) Comparative analysis of the mitochondrial cytochrome c oxidase subunit I (COI) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker. Syst. Biodivers. 8: 131-148
  • Tait A. (1970) Enzyme variation between syngens in Paramecium aurelia. Biochem. Genet. 4: 461-470
  • Tamura K., Nei M., Kumar S. (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Natl. Acad. Sci. U.S.A. 101: 11030-11035
  • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739
  • Tarcz S. (2012) Intraspecific differentiation of Paramecium novaurelia strains (Ciliophora, Protozoa) inferred from phylogenetic analysis of ribosomal and mitochondrial DNA variation. Eur. J. Protistol. 49: 50-61
  • Tarcz S., Potekhin A., Rautian M., Przybos E. (2012) Variation in ribosomal and mitochondrial sequences demonstrates the existence of intraspecific groups in Paramecium multimicronucleatum (Ciliophora, Oligohymenophorea). Mol. Phylogenet. Evol. 63: 500-509
  • Tarcz S., Przybos E., Prajer M., Greczek-Stachura M. (2006) Intraspecific variation of diagnostic rDNA genes in Paramecium dodecaurelia, P. tredecaurelia and P. quadecaurelia (Ciliophora: Oligohymenophorea). Acta Protozool. 45: 255-263
  • Thompson J. D., Higgins D. G., Gibson T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific penal- ties and weight matrix choice. Nucl. Acids Res. 22: 4673-4680
  • Weisse T., Struder-Kypke M. C., Berger H., Foissner W. (2008) Genetic, morphological, and ecological diversity of spatially separated clones of Meseres corlissi Petz & Foissner, 1992 (Ciliophora, Spirotrichea). J. Eukaryot. Microbiol. 55: 257-270
  • White T. J., Bruns T., Lee S., Taylor J. W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: A Guide to Methods and Applications, (Eds. M. A. Innis, D. H. Gelfand, J. J Sninsky, T. J White). Academic Press, Inc., New York, 315-322