Published March 15, 2024
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Ancient diversity within Diporodrilus (Crassiclitellata, Annelida) clarify the historical biogeography of Corso-Sardinian earthworms
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Marchán, Daniel F., Navarro, Alejandro Martínez, Gérard, Sylvain, Decaëns, Thibaud, Novo, Marta (2024): Ancient diversity within Diporodrilus (Crassiclitellata, Annelida) clarify the historical biogeography of Corso-Sardinian earthworms. Organisms Diversity & Evolution (New York, N.Y.) 24 (2): 163-179, DOI: 10.1007/s13127-024-00639-w, URL: http://dx.doi.org/10.1007/s13127-024-00639-w
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References
- Akaike, H. (1973). Maximum likelihood identification of Gaussian autoregressive moving average models. Biometrika, 60(2), 255-265.
- Aspe, N. M., & James, S. W. (2018). Molecular phylogeny and biogeographic distribution of pheretimoid earthworms (clitellata: Megascolecidae) of the Philippine archipelago. European Journal of Soil Biology, 85, 89-97. https://doi.org/10.1016/j.ejsobi. 2018.02.001
- Bouche, M. B. (1970). Remarques sur quelques Lumbricina de France et consequences de la decouverte des nouveaux taxons Vignysinae (Subfam. nov.) et Diporodrilidae (Fam. nov.). Pedobiologia, 10(1), 246-256.
- Bouche, M. B. (1972). Lombriciens de France. Ecologie et systematique 72, 671 pages. INRA Editions.
- Bouche, M. B., & Beugnot, M. (1972). La complexite taxonomique de Lumbricus herculeus illustree par les caracteristiques de populations de stations de la RCP 40. Revue d'ecologie et de biologie du sol, 9, 697-704.
- Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution, 17, 540-552. https://doi.org/10.1093/ oxfordjournals.molbev.a026334
- Cognetti de Martiis, L. (1903). Res Italicae IX. Contributo alla conoscenza della drilofauna sarda. Boll. Mus. Torino, XVIII(456), 3.
- Cognetti de Martis, L. (1914). Nota sugli oligocheti degli Abruzzi. Bolletino dei Musei di Zoologia ed Anatomia comparata della R. Universita di Torino, 29(689), 1-5.
- Darriba, D., Taboada, G. L., Doallo, R., & Posada, D. (2012). jModelTest 2: More models, new heuristics and parallel computing. Nature Methods, 9(8), 772.
- Dominguez, J., Aira, M., Porto, P. G., Diaz Cosin, D. J., & Perez-Losada, M. (2018). Multigene phylogeny reveals two new isolated and relic earthworm genera (Oligochaeta: Lumbricidae). Zoological Journal of the Linnean Society, 182(2), 258-274.
- Fernandez, R., Almodovar, A., Novo, M., Gutierrez, M., & Cosin, D. J. D. (2013). Earthworms, good indicators for palaeogeographical studies? Testing the genetic structure and demographic history in the peregrine earthworm Aporrectodea trapezoides (Duges, 1828) in southern Europe. Soil Biology and Biochemistry, 58, 127-135. https://doi.org/10.1016/j.soilbio.2012.10.021
- Gattolliat, J. L., Cavallo, E., Vuataz, L., & Sartori, M. (2015). DNA barcoding of Corsican mayflies (Ephemeroptera) with implications on biogeography, systematics and biodiversity. Arthropod Systematics & Phylogeny, 73, 3-18.
- Goulpeau, A., Penel, B., Maggia, M. E., Marchan, D. F., Steinke, D., Hedde, M., & Decaens, T. (2022). OTU delimitation with earthworm DNA barcodes: A comparison of methods. Diversity, 14(10), 866. https://doi.org/10.3390/d14100866
- Grill, A., Casula, P., Lecis, R., & Menken, S. (2007). Endemism in Sardinia. Phylogeography of Southern European Refugia: Evolutionary perspectives on the origins and conservation of European biodiversity, pp. 273-296.
- Grube, A. E. (1850). Die Familien der Anneliden. Archiv fur Naturgeschichte, 16, 249-361.
- Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In Nucleic acids symposium series, 41(41), 95-98.
- James, S. W., Porco, D., Decaens, T., Richard, B., Rougerie, R., & Erseus, C. (2010). DNA barcoding reveals cryptic diversity in Lumbricus terrestris L., 1758 (Clitellata): Resurrection of L. herculeus (Savigny, 1826). PloS one, 5(12), 15629. https://doi.org/ 10.1371/journal.pone.0015629
- Jamieson, B. G. M. (1988). On the phylogeny and higher classification of the Oligochaeta. Cladistics, 4, 367-410.
- Katoh, K., & Standley, D. M. (2013). MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution, 30(4), 772-780. https:// doi.org/10.1093/molbev/mst010
- Kozlov, A. M., Darriba, D., Flouri, T., Morel, B., & Stamatakis, A. (2019). RAxML-NG: A fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics, 35, 4453-4455. https://doi.org/10.1093/bioinformatics/btz305
- Lamarck, J. B. (1802). Discours d'Ouverture, Prononce le 27 floreal An 10, au Museum dHistoire naturelle. Recherches sur l'organisation des corps vivans. Bulletin Scientifique de la France et de la Belgique., (5th series) 40, 483-517.
- Lawler, J. J., White, D., Sifneos, J. C., & Master, L. L. (2003). Rare species and the use of indicator groups for conservation planning. Conservation Biology, 17(3), 875-882. https://doi.org/10.1046/j. 1523-1739.2003.01638.x
- Leigh, J. W., & Bryant, D. (2015). POPART: Full-feature software for haplotype network construction. Methods in Ecology and Evolution, 6(9), 1110-1116. https://doi.org/10.1111/2041-210X.12410
- Marchan, D. F., Gerard, S., Hedde, M., Rougerie, R., & Decaens, T. (2022a). An updated checklist and a DNA barcode library for the earthworms (Crassiclitellata, Oligochaeta) of Corsica. France. Zoosystema, 44(17), 439-461. https://doi.org/10.5252/zoosystema 2022v44a17
- Marchan, D. F., James, S. W., Lemmon, A. R., Lemmon, E. M., Novo, M., Dominguez, J., & Trigo, D. (2022b). A strong backbone for an invertebrate group: Anchored phylogenomics improves the resolution of genus-level relationships within the Lumbricidae (Annelida, Crassiclitellata). Organisms Diversity & Evolution, 22, 915-924. https://doi.org/10.1007/s13127-022-00582-8
- Marchan, D. F., Dominguez, J., Hedde, M., & Decaens, T. (2023). The cradle of giants: Insights into the origin of Scherotheca Bouche, 1972 (Lumbricidae, Crassiclitellata) with the descriptions of eight new species from Corsica. France. Zoosystema, 45(3), 107-123. https://doi.org/10.5252/zoosystema2023v45a3
- Marchan, D. F., Fernandez, R., de Sosa, I., Diaz Cosin, D. J., & Novo, M. (2017). Pinpointing cryptic borders: Fine-scale phylogeography and genetic landscape analysis of the Hormogaster elisae complex (Oligochaeta, Hormogastridae). Molecular Phylogenetics and Evolution, 112, 185-193. https://doi.org/10.1016/j.ympev. 2017.05.005
- Marchan, D. F., Fernandez, R., de Sosa, I., Sanchez, N., Diaz Cosin, D. J., & Novo, M. (2018). Integrative systematic revision of a Mediterranean earthworm family: Hormogastridae (Annelida, Oligochaeta). Invertebrate Systematics, 32(3), 652-671. https:// doi.org/10.1071/IS17048
- Marchan, D. F., Fernandez, R., Dominguez, J., Diaz Cosin, D. J., & Novo, M. (2020). Genome-informed integrative taxonomic description of three cryptic species in the earthworm genus Carpetania (Oligochaeta, Hormogastridae). Systematics and Biodiversity, 18(3), 203-215. https://doi.org/10.1080/14772000.2020. 1730474
- Michaelsen, W. (1919). Uber die Beziehungen der Hirudineen zu den Oligochaten. Jahrbuch der Hamburgischen Wissenschaftlichen Anstalten, Hamburg, 36, 131-153.
- Novo, M., Almodovar, A., Fernandez, R. M., Gutierrez, M., & Cosin, D. J. D. (2010). Mate choice of an endogeic earthworm revealed by microsatellite markers. Pedobiologia, 53(6), 375-379. https:// doi.org/10.1016/j.pedobi.2010.07.002
- Novo, M., Fernandez, R., Fernandez Marchan, D., Trigo, D., Diaz Cosin, D. J., & Giribet, G. (2015). Unearthing the historical biogeography of Mediterranean earthworms (Annelida: Hormogastridae). Journal of Biogeography, 42(4), 751-762. https://doi.org/ 10.1111/jbi.12447
- Omodeo, P. (1984). The earthworm fauna of Sardinia. Revue d'Ecologie et Biologie du Sol, 21, 115-126.
- Perez-Losada, M., Ricoy, M., Marshall, J. C., & Dominguez, J. (2009). Phylogenetic assessment of the earthworm Aporrectodea caliginosa species complex (Oligochaeta: Lumbricidae) based on mitochondrial and nuclear DNA sequences. Molecular Phylogenetics and Evolution, 52(2), 293-302.
- Perez-Losada, M., Breinholt, J. W., Aira, M., & Dominguez, J. (2015). An updated multilocus phylogeny of the Lumbricidae (Annelida: Clitellata: Oligochaeta) earthworms. Journal of Phylogenetics & Evolutionary Biology, 3(1), 1-4.
- Puillandre, N., Brouillet, S., & Achaz, G. (2021). ASAP: Assemble species by automatic partitioning. Molecular Ecology Resources, 21(2), 609-620. https://doi.org/10.1111/1755-0998.13281
- Qiu, J. P., & Bouche, M. B. (1998). Revision des taxons supraspecifiques de Lumbricoidea. Documents pedozoologiques et integrologiques, 3, 179-216.
- Rambaut, A., Drummond, A. J., Xie, D., Baele, G., & Suchard, M. A. (2018). Posterior summarisation in Bayesian phylogenetics using Tracer. Systematic Biology, 67(5), 901-904. https://doi.org/10. 1093/sysbio/syy032
- Ronquist, F., & Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19(12), 1572-1574. https://doi.org/10.1093/bioinformatics/ btg180
- Rosenbaum, G., Lister, G., & Duboz, C. (2002). Reconstruction of the tectonic evolution of the Western Mediterranean since the Oligocene. Reconstruction of the evolution of the Alpine-Himalayan Orogen. In G. Rosenbaum & G. S. Lister (Eds.), Journal of the Virtual Explorer (Vol. 8, pp. 107-130)
- Schwarz, G. (1978). Estimating the dimension of a model. The Annals of Statistics, 6, 461-464.
- Siravo, G., Speranza, F., & Mattei, M. (2023). Paleomagnetic evidence for pre -21 Ma independent drift of South Sardinia from North Sardinia -Corsica:"Greater Iberia" vs. Europe. Tectonics, 42, 1-15. https://doi.org/10.1029/2022TC007705
- Sissingh, W. (2006). Syn-kinematic palaeogeographic evolution of the West European Platform: Correlation with Alpine plate collision and foreland deformation. Netherlands Journal of Geosciences, 85(2), 131-180. https://doi.org/10.1017/S001677460 0077933
- Smith, K. L., Harmon, L. J., Shoo, L. P., & Melville, J. (2011). Evidence of constrained phenotypic evolution in a cryptic species complex of agamid lizards. Evolution, 65(4), 976-992. https:// doi.org/10.1111/j.1558-5646.2010.01211.x
- Suchard, M. A., Lemey, P., Baele, G., Ayres, D. L., Drummond, A. J., & Rambaut, A. (2018). Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evolution, 4, vey016. https://doi.org/10.1093/ve/vey016
- Zicsi, A. (1981). Weitere Angaben zur Lumbricidenfauna Italiens (Oligochaeta: Lumbricidae). Opuscula Zoologica Budapest, 17-18, 157-180.