Published August 2, 2024 | Version v1.0
Dataset Open

Platinum Tandem Repeats

Creators

  • 1. University of Utah
  • 2. ROR icon University of Colorado Anschutz Medical Campus

Description

Annotation of tandem repeat loci in the human genome

  • ~7.8 million loci: STRs and VNTRs
  • Minimum locus size 10 bp
  • Maximum locus size 10,000 bp
  • Loci within 50 bp are merged to produce compound/complex loci
  • CHM13-T2T and GRCh38 genomes
  • TRGT locus definitions and bed files
  • Generated using Tandem Repeats Finder and tr-solve
 

For more details and the code used to generate the loci, see:

https://github.com/dashnowlab/PlatinumTRs

This data was used to call tandem repeat genotypes using TRGT by the Platinum Pedigree Consortium.

Files

Files (670.8 MB)

Additional details

Funding

Revealing new short tandem repeat variation in the human population across sequencing technologies: towards rare disease diagnosis and discovery 5K99HG012796-02
National Institutes of Health

Software

Repository URL
https://github.com/dashnowlab/PlatinumTRs