Published August 2, 2024 | Version v1.0
Dataset Open

Platinum Tandem Repeats

Authors/Creators

  • 1. University of Utah
  • 2. ROR icon University of Colorado Anschutz Medical Campus

Description

Annotation of tandem repeat loci in the human genome

  • ~7.8 million loci: STRs and VNTRs
  • Minimum locus size 10 bp
  • Maximum locus size 10,000 bp
  • Loci within 50 bp are merged to produce compound/complex loci
  • CHM13-T2T and GRCh38 genomes
  • TRGT locus definitions and bed files
  • Generated using Tandem Repeats Finder and tr-solve
 

For more details and the code used to generate the loci, see:

https://github.com/dashnowlab/PlatinumTRs

This data was used to call tandem repeat genotypes using TRGT by the Platinum Pedigree Consortium.

Files

Files (670.8 MB)

Name Size
md5:b4fd30bbbbf8f967e085438141c66a48
188.9 MB Download
md5:c09c326b80eeba37d20b7755d7665c9d
148.3 MB Download
md5:5a02002d1933df89b4ca0525265dc6b9
186.9 MB Download
md5:758b3ad036a137d4122c053a68ae9bdd
146.7 MB Download

Additional details

Funding

National Institutes of Health
Revealing new short tandem repeat variation in the human population across sequencing technologies: towards rare disease diagnosis and discovery 5K99HG012796-02

Software

Repository URL
https://github.com/dashnowlab/PlatinumTRs