Release Update Summary

Recent Changes

• Command Renaming:

  • Commands starting with cluster_ have been renamed to cstats_ to ensure consistency with existing vstats and rstats commands.

• Guide Updates:

  • Added a terminal cheat sheet and new video links aimed at beginners.
  • Simplified argument structure to enhance usability.
  • Update the installation guide

• CSV and Logic Updates:

  • Renamed CSV files, updated help documentation, revised arguments, and adjusted logic.
  • Removed specific CSV files: region_ID_side_name_abbr.csv and sunburst_IDPath_Abbrv_wo_root.csv.

• Template and Defaults:

  • Updated information on the iDISCO/LSFM template.
  • Set the defaults to use CCFv3 (30 µm) with the iDISCO/LSFM template. The template has been warped to CCF space with refined alignment.

These changes enhance consistency, simplify usage, and improve documentation, aligning with updates to templates and default settings.