Singularity container for scRNA-Seq analysis

This record contains only a Singularity container (.simg file). To access the source, please check the "Version v1 + source files" in the Versions panel on the right.

This Singularity container (v1) was used to compile the R Markdown notebooks relative to the single-cell RNA Sequencing analysis in the following publications/preprints:

1. Mansour, Onfroy et al., Exploring the mechanisms governing the initiation of plexiform neurofibromas using Prss56Cre,Nf1-KO mouse model at a single-cell resolution, bioRxiv; doi: 10.1101/2025.07.04.662123
2. Onfroy et al., Twelve tips for reproducible analysis of single-cell transcriptomics data, ACM REP '25: Proceedings of the 3rd ACM Conference on Reproducibility and Replicability; doi: 10.1145/3736731.3746138
3. Onfroy et al.,  Hair follicle stem cell fate supports distinct clinical endotypes in Hidradenitis suppurativa , JEADV; doi: 10.1101/2025.05.28.656362
4. Radomska et al., Glial-to-mesenchymal transition of tumor Schwann cells drives the genetic burden in MPNSTs from Neurofibromatosis type 1 mouse model, Science Advances; doi: 10.1126/sciadv.adt9210
5. Brunet et al., Immune landscape characterization of premalignant Dysplastic Neurofibromas reveals PD-1 and the Tim-3/Galectin-9 pathway as potential therapeutic targets, under review

The analyses are available on GitHub (all versions) and Zenodo (published version):